Job Description P0AGD7 Confidence 96.70% Date Thu Jan 5 11:28:50 GMT 2012 Rank 304 Aligned Residues 121 % Identity 17% Template c4a4zA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:antiviral helicase ski2; PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp Resolution 2.40 Å

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		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.									.	170	.	.	.
Predicted Secondary structure																																																								.													.	.	.	.	.	.	.	.
Query SS confidence																																																								.													.	.	.	.	.	.	.	.
Query Sequence		V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	.	V	D	F	F	P	S	D	V	G	Q	K	P	.	.	.	.	.	.	.	.	V	D	I	V	N
Query Conservation																																																								.													.	.	.	.	.	.	.	.
Alig confidence														.																						.	.																			.													.	.	.	.	.	.	.	.
Template Conservation														.																						.	.
Template Sequence		V	F	V	A	A	H	T	S	A	G	K	T	.	V	V	A	E	Y	A	I	A	M	A	H	R	N	M	T	K	T	I	Y	T	S	.	.	P	I	K	A	L	S	N	Q	K	F	R	D	F	K	E	T	F	V	N	I	G	L	I	T	G	D	V	Q	I	N	P	D	A	N	C	L	I	M	T	T	E	I	L	R
Template Known Secondary structure								T	T	S		S		.													T	T								.	.	S		G	G	G										T	T									S	S					T	T	S	S
Template Predicted Secondary structure														.																						.	.
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.			380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		174	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		A	A	L	K	E	A	K	.	.	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q
Query Conservation									.	.
Alig confidence									.	.																.
Template Conservation																										.
Template Sequence		S	M	L	Y	R	G	A	D	L	I	R	D	V	E	F	V	I	F	D	E	V	H	Y	V	.	N	D	Q	D	R	G	V	V	W	E	E	V	I	I	M	L	P	Q	H	V	K	F	I	L	L	S	A	T	V	P	N
Template Known Secondary structure							T		S	G	G	G	G									T	T			.		T	T		T	T										S		T	T											T	T
Template Predicted Secondary structure																										.
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions