Job Description P0AGD7 Confidence 95.12% Date Thu Jan 5 11:28:50 GMT 2012 Rank 496 Aligned Residues 124 % Identity 16% Template c3tmiA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase ddx58; PDBTitle: structural basis for rna recognition and activation of rig-i Resolution 2.90 Å

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		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.											.																															.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.											.																															.	.	.	.	.	.	.	.	.
Query Sequence		V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	.	.	.	.	K	K	K	V	L	V	V	S	A	D	.	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.	.	.											.																															.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.											.																															.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	I	I	C	A	P	T	G	C	G	K	T	F	V	S	L	L	I	C	E	H	H	L	K	K	F	P	Q	G	Q	K	G	K	V	V	F	F	A	N	Q	I	P	V	Y	E	Q	Q	K	S	V	F	S	K	Y	F	E	R	H	G	Y	R	V	T	G	I	S	G	A	T	A	E	N	V	P	V	E	Q	I	V	E
Template Known Secondary structure								T	T	S																T	S		T	T										S	S																T	T	T	T								T	T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
										169	170	.	.	.	.	.	.	.	.	.	180				.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.						210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.													.	.	.																														.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.													.	.	.																														.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	V	D	I	V	N	A	A	L	K	E	A	K	.	.	.	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	.	.	.	.	.	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G
Query Conservation		.	.	.	.	.	.	.	.													.	.	.																														.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.													.	.	.																														.	.	.	.	.
Template Conservation
Template Sequence		N	N	D	I	I	I	L	T	P	Q	I	L	V	N	N	L	K	K	G	T	I	P	S	L	S	I	F	T	L	M	I	F	D	E	C	H	N	T	S	K	Q	H	P	Y	N	M	I	M	F	N	Y	L	D	Q	K	L	G	G	S	S	G	P	L	P	Q	V	I	G	L	T	A	S	V	G
Template Known Secondary structure		T		S															T	T	S	S			G	G	G		S						T	G	G	G	S	S	S	S	S													T	T	S	S			S										S
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions