 |
Job Description | P0AGD7 | Confidence | 95.32% | Date | Thu Jan 5 11:28:50 GMT 2012 |
Rank | 478 | Aligned Residues | 80 |
% Identity | 19% | Template | c3tbkA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:rig-i helicase domain; |
PDBTitle: mouse rig-i atpase domain
|
Resolution | 2.14 Å |
|
 |
  |   |
103 | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | |
|
|
|
. | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | |
|
|
. | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . |
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | L | M | A | G | L | Q | G | A | G | K | T | T | S | V | G | K | L | G | K | F | L | R | E | K | H | . |
. |
. |
. |
K | K | K | V | L | V | V | S | A | D | V | Y | R | P | A | A | I | K | Q | . |
. |
. |
L | E | T | L | A | E | Q | V | G | V | D | F | F | P | S | D | V | G | Q | K | P | V | D | I | V | N | A | A |
Query Conservation |   |
|
|
|
|
|   |   |
|   |
|
|
|
|
|   |
|
|
|
|   |   |   |   |   |
|   | . | . | . | . |
|
|   |
|   |
|
|   |
|
|
|   |
|   |
|
|   |
|
| . | . | . |
|
|   |   |
|   |   |   |
|
|
|   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Template Conservation |   |
  |
|
|   |   |   |
|
|
|
|
|
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|   | . | . |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   | . |
Template Sequence |   |
T | I | I | C | A | P | T | G | C | G | K | T | F | V | S | L | L | I | C | E | H | H | L | K | K | F | P | C | G | Q | K | G | K | V | V | F | F | A | . |
. |
N | Q | I | P | V | Y | E | Q | Q | A | T | V | F | S | R | Y | F | E | R | L | G | Y | N | I | A | S | I | S | G | A | T | S | D | S | V | S | V | Q | H | . |
Template Known Secondary structure |   |
 |  |  |  |
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| S | S |
|
|
|
|  |  |  |  |
| . | . | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |  |  |
| T | T | T | G | G | G | S |
|  |  |  | . |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
261 | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | |
|
. | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | |
  |
  |   |
176 | . | . | . | 180 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | K | E | A | K | L | K | F | Y | D | V | L | L | V |
Query Conservation |   |
|   |   |
|
|   |   |   |   |
|
|
|
|
|
Alig confidence |   |
. | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . |   |   |   |   |   |   |
|   |
|   |
Template Sequence |   |
. |
. |
. |
. |
I | I | E | D | N | D | I | I | I | L |
Template Known Secondary structure |   |
. | . | . | . |  |  |  |  |
| S |  |  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
338 | . | 340 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|