Job Description P0AGD7 Confidence 99.19% Date Thu Jan 5 11:28:50 GMT 2012 Rank 38 Aligned Residues 270 % Identity 19% Template c3nxsA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:lao/ao transport system atpase; PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp Resolution 2.30 Å

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		48	.	50	.	.	.	.	.	.				.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		V	R	E	F	I	N	R	V	K	.	.	.	E	K	A	V	G	H	E	V	N	K	S	L	T	P	G	Q	E	F	V	K	I	V	R	N	E	L	V	A	A	M	G	E	E	N	Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L
Query Conservation											.	.	.
Alig confidence											.	.	.																																.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.
Template Sequence		V	H	E	L	A	Q	S	I	R	D	G	D	R	S	A	L	A	R	A	I	T	L	V	E	S	T	R	A	D	H	R	E	Q	A	Q	Q	L	L	L	D	L	M	P	.	.	.	.	.	.	.	.	E	A	G	S	A	M	H	V	G	I	T	G	V	P	G	V	G	K	S	T	T	I	E	A	L	G	M	H	L
Template Known Secondary structure												T																S														T	T	T	.	.	.	.	.	.	.	.	T	T	T		S									T	T	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.									50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.				.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	.	.	.	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M
Query Conservation																																													.	.	.
Alig confidence					.														.	.	.	.	.	.	.	.																			.	.	.
Template Conservation					.														.	.	.	.	.	.	.	.
Template Sequence		I	E	A	.	G	H	R	V	A	V	L	A	V	D	R	M	A	.	.	.	.	.	.	.	.	R	L	A	V	H	P	D	A	Y	I	R	P	S	P	T	S	G	T	L	G	G	V	A	K	A	T	R	E	T	I	V	L	L	E	A	A	G	Y	D	V	I	L	V	E	T	V	G	V	G	Q	S	E	V	T	V
Template Known Secondary structure				T	.	T													.	.	.	.	.	.	.	.						T	T										S																			T	T												T	T
Template Predicted Secondary structure					.														.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.									.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.														.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P	L	T	G	V	V	L	T	K	V	D	G	D	A	R	G	G	A	A	L	S	I	R	H	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.																														.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.																														.	.
Template Sequence		A	G	M	.	.	.	.	.	.	.	.	.	V	D	T	F	V	F	L	T	L	A	R	T	G	D	Q	L	Q	G	I	K	K	G	V	L	E	L	A	D	V	.	.	I	V	V	N	K	A	D	G	E	H	A	V	E	A	K	A	A	A	R	E	L	S	G	A	I	R	L	I	Y	P	R	E	S	L	W	R	P
Template Known Secondary structure			T	T	.	.	.	.	.	.	.	.	.		S									S	S	S	S							T	T		G	G	G		S		.	.								G	G	G																			S		T	T		S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.																														.	.
Template SS confidence
		165	.	.										.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		269	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		P	I	K	F	L	G	.	.	V	G	E	K	T	E	A	L	E	P	F	H	P	D	R	I	A	S	R	I	L	G	M	G	D	V	L	S	L	I	E	D	I	E	S	K	V	D	R	A	Q	A	E	K	L	A	S	K	L	K	K	G	D	G	F	D	L	N	D	F	L	E	Q	L	R	Q	M	K	N	M	G	G
Query Conservation								.	.
Alig confidence								.	.												.																																										.
Template Conservation																					.																																										.
Template Sequence		P	V	L	T	M	S	A	V	E	G	T	G	L	P	E	L	W	E	T	.	V	L	R	H	R	E	V	L	E	E	A	G	E	F	E	A	R	R	R	T	Q	Q	V	E	W	T	W	S	M	V	R	D	A	V	L	D	R	V	M	N	H	.	P	E	V	R	R	I	R	D	D	V	E	Q	R	V	R	L	G	E
Template Known Secondary structure								T	T	T		T	T								.											T	T																												T		.																T	T	S
Template Predicted Secondary structure																					.																																										.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		347
Predicted Secondary structure
Query SS confidence
Query Sequence		M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		312

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions