Job Description P0AGD7 Confidence 98.06% Date Thu Jan 5 11:28:50 GMT 2012 Rank 89 Aligned Residues 226 % Identity 19% Template c3md0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:arginine/ornithine transport system atpase; PDBTitle: crystal structure of arginine/ornithine transport system2 atpase from mycobacterium tuberculosis bound to gdp (a ras-3 like gtpase superfamily protein) Resolution 2.45 Å

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		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A
Query Conservation
Alig confidence																																			.												.	.	.	.	.	.	.	.	.																		.
Template Conservation																																			.												.	.	.	.	.	.	.	.	.																		.
Template Sequence		P	D	S	G	N	A	H	R	V	G	I	T	G	V	P	G	V	G	K	S	T	A	I	E	A	L	G	M	H	L	I	E	R	.	G	H	R	V	A	V	L	A	V	R	M	.	.	.	.	.	.	.	.	.	A	R	L	A	V	H	P	N	A	Y	I	R	P	S	T	L	G	.	G	V	T	R	A	T	R	E
Template Known Secondary structure		G	G				S									T	T	S	S														T	T	.	T											.	.	.	.	.	.	.	.	.					T	S	T	T										.
Template Predicted Secondary structure																																			.												.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.										.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P	L	T	G	V	V	L	T	K	V	D	G	D	A
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template Sequence		T	V	V	L	L	E	A	A	G	F	D	V	I	L	I	E	T	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	S	E	V	A	V	A	N	M	V	D	T	F	V	L	L	T	L	A	R	T	G	D	Q	L	.	.	Q	G	I	K	K	G	V	L	E	L	A	D	I	V	V	V	N	K	A	D	G	E	H
Template Known Secondary structure									T	T											.	.	.	.	.	.	.	.	.	.	.	.							T	T		S								S		T	T	T	T	T	.	.	T	T			T	T	G	G	G	G		S									G	G	G
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.																									.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160													.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.														.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Query Sequence		R	G	G	A	A	L	S	I	R	H	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	P	I	K	F	L	.	.	G	V	G	E	K	T	E	A	L	E	P	F	H	P	D	R	I	A	S	R	I	L	G	M	G	D	V	L	S	L	I	E	D	I	E	S	K	V	D	R	A	Q	A	E	K	L
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.								.	.												.
Template Conservation																																															.
Template Sequence		H	K	E	A	R	L	A	A	R	E	L	S	A	A	I	R	L	I	Y	P	R	E	A	L	W	R	P	P	V	L	T	M	S	A	V	E	G	R	G	L	A	E	L	W	D	.	T	V	E	R	H	R	Q	V	L	T	G	A	G	E	F	D	A	R	R	R	D	Q	Q	V	D	W	T	W	Q	L	V	R	D	A
Template Known Secondary structure																				S	T	T		S	S									B	T	T	T	T	B	S							.												T	T
Template Predicted Secondary structure																																															.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	K	L	K	K	G	D	G	F	D	L	N	D	F	L	E	Q	L	R	Q	M	K	N	M	G	G	M
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		V	L	D	R	V	W	S	N	.	P	T	V	R	K	V	R	S	E	L	E	R	R	V	R	A	G	E	L
Template Known Secondary structure								T		.																T	T	S	S
Template Predicted Secondary structure										.
Template SS confidence
		290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions