Job Description P0AGD7 Confidence 97.42% Date Thu Jan 5 11:28:50 GMT 2012 Rank 187 Aligned Residues 146 % Identity 19% Template c3ievA_ PDB info PDB header:nucleotide binding protein/rna Chain: A: PDB Molecule:gtp-binding protein era; PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna Resolution 1.90 Å

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		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L
Query Conservation
Alig confidence																						.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	V	A	I	V	G	K	P	N	V	G	K	S	T	L	L	N	N	L	L	.	.	.	.	.	.	.	G	T	K	V	S	I	I	S	P	K	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	R	M	R	V	L	G	V	K	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P
Template Known Secondary structure								S	T	T	S	S										.	.	.	.	.	.	.	T	S			S				S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.				S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.								.	.	.	.	.	30	.	.	.	.	.	.														.	.	.	40	.	.	.	.	.	.	.	.																.
		182	.	.	.	.	.	.	.	190	.	.	.					.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure														.	.	.	.																																						.	.	.
Query SS confidence														.	.	.	.																																						.	.	.
Query Sequence		K	F	Y	D	V	L	L	V	D	T	A	G	.	.	.	.	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	D	A	A	.	.	.	N	T	A	K	A	F	N	E	A	L	P	L	T	G	V	V	L	T	K	V	D	G	D	A
Query Conservation														.	.	.	.																																						.	.	.
Alig confidence														.	.	.	.																																						.	.	.
Template Conservation
Template Sequence		N	E	A	Q	I	I	F	L	D	T	P	G	I	Y	E	P	K	K	S	D	V	L	G	H	S	M	V	E	I	A	K	Q	S	L	E	E	A	D	V	I	L	F	M	I	D	A	T	E	G	W	R	P	R	D	E	E	I	Y	Q	N	F	I	K	P	L	N	K	P	V	I	V	V	I	N	K	I	D	K	I	G
Template Known Secondary structure		T	T																T	T																			S								T	T	T	B	S												T	G	G	G											G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.							.	.	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.
Predicted Secondary structure													.	.	.	.	.	.										.	.
Query SS confidence													.	.	.	.	.	.										.	.
Query Sequence		R	G	G	A	A	L	S	I	R	H	I	.	.	.	.	.	.	T	G	K	P	I	K	F	L	G	.	.	V	G	E	K	T	E	A	L
Query Conservation													.	.	.	.	.	.										.	.
Alig confidence													.	.	.	.	.	.										.	.
Template Conservation
Template Sequence		P	A	K	N	V	L	P	L	I	D	E	I	H	K	K	H	P	E	L	T	E	I	V	P	I	S	A	L	K	G	A	N	L	D	E	L
Template Known Secondary structure		S	G	G	G	G												T	T								B	T	T	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions