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Job DescriptionP0AGD7
Confidence97.08%DateThu Jan 5 11:28:50 GMT 2012
Rank246Aligned Residues165
% Identity19%Templatec3cmwA_
PDB info PDB header:recombination/dnaChain: A: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.........70.........80.........90.......
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Query Sequence  EDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAA. . . . . .
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Template Sequence  KANATAWLKD. . . . . . . . . . NPETAKEIEKKVRELLLSNPNSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVE
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GGGSGGG
GGGS

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   2302.......2310. ........2320.........2330.........2340.........2350.........2360.........2370.
 
   98.100.........110.........120.........130.........140.........150.........
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Query Sequence  . . . . . . . . . . . . . . . . . . QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDF
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Template Sequence  TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ. REGKTCAFIDAEH. . . . ALD. . PIYARKLGVDI
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STTSS.TT


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G
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   30393040.........3050.........3060.........3070.........3080.... .....3090....... ..3100 .........3110.
 
   160 .........170......... 180.........190.........200.....
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Query Sequence  F. PSDVGQKPVDIVNAALKEA. KLKFYDVLLVDTAGRLHVDEAMMDEI
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Template Sequence  DNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
Template Known Secondary structure  GG


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   3112.......3120.........3130.........3140.........3150.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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