Job Description P0AGD7 Confidence 95.40% Date Thu Jan 5 11:28:50 GMT 2012 Rank 469 Aligned Residues 189 % Identity 19% Template c3cmuA_ PDB info PDB header:recombination/dna Chain: A: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures Resolution 4.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.																									.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	P	V	V	R	E	F	I	N	R	V	K	E	K	A	V	G	H	E	V	N	K	S	L	T	P	G	Q	E	F	V	K	I	V	R	N	E	L	V	A	A	M	G	E	E	N	Q	T	L	N	L	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	P
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	P	E	T	A	K	E	I	E	K	K	V	R	E	L	L	L	S	N	P	N	S	A	I	D	E	N	K	Q	K	A	L	A	A	A	L	G	Q	I	E	K	Q	F	G	K	G	S	I	M	R	L	G	E	D	R	S	M	D	V	E	T	I	S	T	G	S	L	S	L	D	I	A	L	G	A	G	G	L	P	M
Template Known Secondary structure																			S	S						S	T	T																		T	T	S				G	G	G		T	T	T								S									S	S	S	S			T
Template Predicted Secondary structure
Template SS confidence
		4312	.	.	.	.	.	.	.	4320	.	.	.	.	.	.	.	.	.	4330	.	.	.	.	.	.	.	.	.	4340	.	.	.	.	.	.	.	.	.	4350	.	.	.	.	.	.	.	.	.	4360	.	.	.	.	.	.	.	.	.	4370	.	.	.	.	.	.	.	.	.	4380	.	.	.	.	.	.	.	.	.	4390	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	.	.	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K
Query Conservation																																																														.	.
Alig confidence																												.														.	.	.	.				.	.												.	.
Template Conservation																												.														.	.	.	.				.	.
Template Sequence		G	R	I	V	E	I	Y	G	P	E	S	S	G	K	T	T	L	T	L	Q	V	I	A	A	A	Q	.	R	E	G	K	T	C	A	F	I	D	A	E	H	.	.	.	.	A	L	D	.	.	P	I	Y	A	R	K	L	G	V	D	I	D	N	L	L	C	S	Q	P	D	T	G	E	Q	A	L	E	I	C	D	A
Template Known Secondary structure		T	S								T	T	S	S														.	T	T	T								T	T	S	.	.	.	.				.	.							T	T			T	T	T							S	S
Template Predicted Secondary structure																												.														.	.	.	.				.	.
Template SS confidence
		5059	5060	.	.	.	.	.	.	.	.	.	5070	.	.	.	.	.	.	.	.	.	5080	.	.	.	.		.	.	.	.	.	5090	.	.	.	.	.	.	.					.	.	5100			.	.	.	.	.	.	.	.	.	5110	.	.	.	.	.	.	.	.	.	5120	.	.	.	.	.	.	.	.	.	5130	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200										.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.								.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Query Sequence		E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	.	.	.	.	.	.	.	.	.	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	.	.	.	.	.	.	.	D	A	M	T	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P
Query Conservation																									.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.										.	.	.	.
Template Conservation																																																																							.	.	.	.
Template Sequence		L	A	R	S	G	A	V	D	V	I	V	V	D	S	V	A	A	L	T	P	K	A	E	I	E	M	G	L	A	A	R	M	M	S	Q	A	M	R	K	L	A	G	N	L	K	Q	S	N	T	L	L	I	F	I	N	Q	I	R	N	P	E	T	T	T	G	G	N	A	L	.	.	.	.	K	F	Y	A	S	V	R
Template Known Secondary structure						T			S					S		G	G	G																													T	T	T																S	S					.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.
Template SS confidence
		5132	.	.	.	.	.	.	.	5140	.	.	.	.	.	.	.	.	.	5150	.	.	.	.	.	.	.	.	.	5160	.	.	.	.	.	.	.	.	.	5170	.	.	.	.	.	.	.	.	.	5180	.	.	.	.	.	.	.	.	.	5190	.	.	.	.	.	.	.	.	.	5200					.	.	.	.	.	.	.
		242	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		5223	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions