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Job DescriptionP0AGD7
Confidence97.44%DateThu Jan 5 11:28:50 GMT 2012
Rank179Aligned Residues131
% Identity16%Templatec3cf1C_
PDB info PDB header:transport proteinChain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx
Resolution4.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   72.......80.........90.........100.........110.........120.........130.........140.........150.
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Query Sequence  QEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETL
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Template Sequence  RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET. . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTTTT
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   210.........220.........230.........240.........250.........260..
 
   152.......160...... ...170.........180.........190 .........200.........210.....
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Query Sequence  AEQVGVDFFPSDVGQ. . . . . . . KPVDIVNAALKEAKLKFYDVLLVD. . . . . . . . . TAGRLHVDEAMMDEIKQVHASINPV
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Template Sequence  . . . . GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR
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   263......270.........280.........290.........300.........310.........320.........330........
 
   216...220.........230...
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Query Sequence  ETLFVVDAMTGQDAANTA
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Template Sequence  AHVIVMAATNRPNSIDPA
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   339340.........350......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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