Return to main results Retrieve Phyre Job Id

Job DescriptionP0AGD7
Confidence97.06%DateThu Jan 5 11:28:50 GMT 2012
Rank251Aligned Residues110
% Identity15%Templatec2z4rB_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa
Resolution3.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   96...100.........110.........120........ .130.........140.........150.........160.........170....
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Query Sequence  AAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKH. KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNA
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Template Sequence  HPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLN. . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  STTTS


SSSSSSSSS
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   126...130.........140.........150.........160.........170.........180.....
 
   175....180.........190.........200.........210.........220.....
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Query Sequence  ALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMT
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Template Sequence  EFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR
Template Known Secondary structure  TTT
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GGGGTT
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   186...190.........200.........210.........220.........230......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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