Job Description P0AGD7 Confidence 97.35% Date Thu Jan 5 11:28:50 GMT 2012 Rank 202 Aligned Residues 146 % Identity 18% Template c2ywfA_ PDB info PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus Resolution 2.24 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template Sequence		M	E	Q	K	N	V	R	N	F	C	I	I	A	H	V	D	H	G	K	S	T	L	A	D	R	L	L	E	Y	T	G	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	T	V	K	M	Q	A	V	R	M	F	Y	K	A	K	.	.	.
Template Known Secondary structure				G	G	G										T	T	S	S													T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S		S								T	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.																													.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.
Predicted Secondary structure																																																						.																				.							.
Query SS confidence																																																						.																				.							.
Query Sequence		A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	.	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P	L	T	G	V	.	V	L	T	K	V	D	.
Query Conservation																																																						.																				.							.
Alig confidence		.	.	.	.	.															.	.	.	.																.	.													.																				.							.
Template Conservation		.	.	.	.	.															.	.	.	.																.	.
Template Sequence		.	.	.	.	.	D	G	N	T	Y	K	L	H	L	I	D	T	P	G	.	.	.	.	H	V	D	F	S	Y	E	V	S	R	A	L	A	A	C	.	.	E	G	A	L	L	L	I	D	A	S	Q	G	I	E	A	Q	T	V	A	N	F	W	K	A	V	E	Q	D	L	V	I	I	P	V	I	N	K	I	D	L
Template Known Secondary structure		.	.	.	.	.	T	S													.	.	.	.	S	G	G	G										T		.	.	S								T	T	T		S														T	T										T	T	S
Template Predicted Secondary structure		.	.	.	.	.															.	.	.	.																.	.
Template SS confidence
							69	70	.	.	.	.	.	.	.	.	.	80	.	.					.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
			252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.				.	270	.	.	.	.			.	.	.	.	.	280	.	.
Predicted Secondary structure		.																		.	.	.							.	.
Query SS confidence		.																		.	.	.							.	.
Query Sequence		.	G	D	A	R	G	G	A	A	L	S	I	R	H	I	T	G	K	.	.	.	P	I	K	F	L	G	.	.	V	G	E	K	T	E	A	L
Query Conservation		.																		.	.	.							.	.
Alig confidence		.																		.	.	.							.	.
Template Conservation
Template Sequence		P	S	A	D	V	D	R	V	K	K	Q	I	E	E	V	L	G	L	D	P	E	E	A	I	L	A	S	A	K	E	G	I	G	I	E	E	I
Template Known Secondary structure		T	T														T				G	G	G					B	T	T	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions