Job Description P0AGD7 Confidence 99.23% Date Thu Jan 5 11:28:50 GMT 2012 Rank 37 Aligned Residues 259 % Identity 16% Template c2wwwB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:methylmalonic aciduria type a protein, PDBTitle: crystal structure of methylmalonic acidemia type a protein Resolution 2.64 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.							.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.
Query Sequence		A	D	V	A	L	P	V	V	R	E	F	I	N	R	V	K	E	K	A	V	G	.	.	.	.	.	.	H	E	V	N	K	S	L	T	P	G	Q	E	F	V	K	I	V	R	N	E	L	V	A	A	M	G	E	E	N	Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T
Query Conservation																							.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.																																									.
Template Conservation																																																																					.
Template Sequence		S	D	K	E	Q	R	F	V	D	K	L	Y	T	G	L	I	Q	G	Q	R	A	C	L	A	E	A	I	T	L	V	E	S	T	H	S	R	K	K	E	L	A	Q	V	L	L	Q	K	V	L	L	Y	H	R	E	Q	E	Q	S	N	K	G	K	P	L	A	F	R	.	V	G	L	S	G	P	P	G	A	G	K	S
Template Known Secondary structure																		T	T																S																								T	T	T	T			S	S			.							T	T	S	S
Template Predicted Secondary structure																																																																					.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R
Query Conservation
Alig confidence															.															.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation															.															.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Sequence		T	F	I	E	Y	F	G	K	M	L	T	E	R	.	G	H	K	L	S	V	L	A	V	D	T	E	L	S	.	.	.	.	.	.	.	.	.	.	R	D	M	N	A	Y	I	R	P	T	R	T	T	N	E	A	I	L	L	C	E	.	.	.	.	.	.	.	G	A	G	Y	D	I	I	L	I	E	T	V	G	Q
Template Known Secondary structure														T	.	T												S	S	.	.	.	.	.	.	.	.	.	.	S		T	T							T	T										.	.	.	.	.	.	.		T	T		S
Template Predicted Secondary structure															.															.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.											.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.								.	.	.	.	210	.	.	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P	L	T	G	V	V	L	T	K	V	D	G	D	A	R	G	G	A	A	L	S	I	R	H	I	T	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	S	E	F	A	V	A	D	M	V	D	M	F	V	L	L	L	P	P	I	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	A	D	L	V	A	V	T	K	S	D	G	D	L	I	V	P	A	R	R	I	Q	A	E	Y	V	S	A	L	K	L	L	R	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.							T	T	S	S										T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S								S	T	T	S	S															T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.															270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
							267	.	.	270	.	.	.	.			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.									.	.
Query SS confidence		.	.	.	.	.									.	.
Query Sequence		.	.	.	.	.	G	K	P	I	K	F	L	G	.	.	V	G	E	K	T	E	A	L	E	P	F	H	P	D	R	I	A	S	R	I	L	G	M	G	D	V	L	S	L	I	E	D	I	E	S	K	V	D	R	A	Q	A	E	K	L	A	S	K	L	K	K	G	D	G	F	D	L	N	D	F	L	E	Q	L	R
Query Conservation		.	.	.	.	.									.	.
Alig confidence		.	.	.	.	.									.	.												.																																										.
Template Conservation																												.																																										.
Template Sequence		R	S	Q	V	W	K	P	K	V	I	R	I	S	A	R	S	G	E	G	I	S	E	M	W	D	K	.	M	K	D	F	Q	D	L	M	L	A	S	G	E	L	T	A	K	R	R	K	Q	Q	K	V	W	M	W	N	L	I	Q	E	S	V	L	E	H	F	R	T	H	.	P	T	V	R	E	Q	I	P	L	L	E
Template Known Secondary structure		S		S	S										T	T	T		T	T								.												S																													S	.
Template Predicted Secondary structure																												.																																										.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.		.	.	.	.	.	.	.	390	.	.	.
		340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	K	N	M	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K	V	L	I	G
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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