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Job DescriptionP0AGD7
Confidence98.20%DateThu Jan 5 11:28:50 GMT 2012
Rank80Aligned Residues203
% Identity12%Templatec2vyeA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:replicative dna helicase; PDBTitle: crystal structure of the dnac-ssdna complex
Resolution4.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.... .....50.........60.........70.....
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Query Sequence  MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVA. . . . . LPVVREFINRVKEKAVGHEVNKSLTPGQEFV
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Template Sequence  LLRRLIRTATSIAQDGYTREDEIDVLLDEAERKIMEVSQRKHSGAFKNIKDVLVQTYDNIEMLHNRNGDITGIPTG. . . .
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   114.....120.........130.........140.........150.........160.........170.........180.........
 
   76...80.........90.........100.........110.........120.........130.........140.........150.....
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Query Sequence  KIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQV
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Template Sequence  . . . FTELDRMTSGFQ. . . . . . . . RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE. . MSAQQLVMRMLCAEG
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SSB
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   190.........200. ........210.........220.........230.........240. ........250......
 
   156.. .160.........170.........180.........190........
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Query Sequence  GVD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . FFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVD. . . . . . . .
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Template Sequence  NINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMVVIDYLQLIQGSGRNRENRQ
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   257..260.........270.........280.........290.........300.........310.........320.........330......
 
   199200.........210.........220
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Query Sequence  . . . EAMMDEIKQVHASINPVETLFV
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Template Sequence  QEVSEISRSLKALARELEVPVIALS
Template Known Secondary structure  TTS
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   337..340.........350.........360.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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