Job Description P0AGD7 Confidence 98.98% Date Thu Jan 5 11:28:50 GMT 2012 Rank 40 Aligned Residues 157 % Identity 20% Template c2vedA_ PDB info PDB header:transferase Chain: A: PDB Molecule:membrane protein capa1, protein tyrosine kinase; PDBTitle: crystal structure of the chimerical mutant capabk55m2 protein Resolution 2.6 Å

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		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																			.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	.	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																			.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.																			.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.
Template Sequence		F	A	N	P	D	S	A	V	Q	S	I	V	I	T	S	E	A	P	G	A	G	M	S	T	I	A	A	N	L	A	V	A	Y	A	Q	A	.	G	Y	K	T	L	I	V	D	G	D	M	R	K	P	T	Q	H	Y	I	F	N	L	P	N	N	E	G	L	S	S	L	L	L	N	W	S	T	Y	Q	D	S	I	I
Template Known Secondary structure			T	S		S	S										S	S	T	T	S	S															T	.	T										S	S	S							T	T				S	S	S						T	T	S	S
Template Predicted Secondary structure																																						.
Template SS confidence
		1034	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.		1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.
							156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.						.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																			.	.	.	.	.																																																				.
Query SS confidence		.	.	.	.	.																			.	.	.	.	.																																																				.
Query Sequence		.	.	.	.	.	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	.	.	.	.	.	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	.
Query Conservation		.	.	.	.	.																			.	.	.	.	.																																																				.
Alig confidence		.	.	.	.	.																			.	.	.	.	.																																			.	.	.	.	.	.	.											.
Template Conservation																																																																.	.	.	.	.	.	.
Template Sequence		S	T	E	I	E	D	L	D	V	L	T	S	G	P	I	P	P	N	P	S	E	L	I	T	S	R	A	F	A	N	L	Y	D	T	L	L	M	N	Y	N	F	V	I	I	D	T	P	P	V	N	T	V	T	D	A	Q	L	F	S	K	F	T	.	.	.	.	.	.	.	G	N	V	V	Y	V	V	N	S	E	N
Template Known Secondary structure				S	S	T	T								S			S							T	S															S									T	T	T		T										.	.	.	.	.	.	.	S								T	T	S
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.
Template SS confidence
		1113	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.								.	.	.	.	.	1180	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		T	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P	.	.	L	T	G	V	V	L	T	K	V	D	G	D	A	R	G	G
Query Conservation																			.	.
Alig confidence																			.	.
Template Conservation
Template Sequence		N	N	K	D	E	V	K	K	G	K	E	L	I	E	A	T	G	A	K	L	L	G	V	V	L	N	R	M	P	K	D	K	S	A	S
Template Known Secondary structure																T	T	T																	S	S
Template Predicted Secondary structure
Template SS confidence
		1186	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions