Return to main results Retrieve Phyre Job Id

Job DescriptionP0AGD7
Confidence100.00%DateThu Jan 5 11:28:50 GMT 2012
Rank17Aligned Residues255
% Identity21%Templatec2px0D_
PDB info PDB header:biosynthetic proteinChain: D: PDB Molecule:flagellar biosynthesis protein flhf; PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+)
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50.........60.........70.........80.........90.........100........
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  DTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGL
Query Conservation    
 

  






    
  
   

                 
 


  

  

             
 





 
Alig confidence 





















































......



















Template Conservation      
    
   

       
   
                  
   
   
......             

 



Template Sequence  EPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGLTEENVVGKLQEILCDML. . . . . . PSADKWQEPIHSKYIVLFGS
Template Known Secondary structure 
SS

TSSS


SSSTS......

STTS


S
SSB


Template Predicted Secondary structure 












......













Template SS confidence 















































































   110.........120.........130.........140.........150.........160... ......170.........180...
 
   109110.........120.........130.........140.........150.........160.........170.........180........
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  QGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLL
Query Conservation   
 




 



     
 

 
 

 


 
 

 



  
   


        

  
   

  

    



Alig confidence 
































































......








Template Conservation 

 




 



       
  
 

  
  
  
 


   
  
 
              
 ......     
 

Template Sequence  TGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE. . . . . . LFSEYDHVF
Template Known Secondary structure  SSS
TS




SSTTTTTTT


SS......TTTTSS
Template Predicted Secondary structure 




















......



Template SS confidence 















































































   184.....190.........200.........210.........220.........230.........240........ .250.......
 
   189190.........200.........210.........220.........230.........240.........250.........260........
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  VDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGK
Query Conservation 





   
  

 

  
     
 
 





  

 
   
  
       







  



 


    
  
Alig confidence 















































































Template Conservation 


 

         

             


 

                     
 





   
  
        
Template Sequence  VDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKI
Template Known Secondary structure 




SSGGGTS


TTB

TTS
TTTTTTSSSS





TTT
S

T
SS
Template Predicted Secondary structure 

































Template SS confidence 















































































   258.260.........270.........280.........290.........300.........310.........320.........330.......
 
   269270......... 280.........290.....
Predicted Secondary structure 





.







Query SS confidence 










.















Query Sequence  PIKFLGVGEKT. EALEPFHPDRIASRIL
Query Conservation 

 





 
.



 
 
   
 


Alig confidence 










.















Template Conservation 

     

 




  
        

Template Sequence  GVGFMTNGQNVPEDIQTVSPLGFVRMLC
Template Known Secondary structure 




SSTTTS



Template Predicted Secondary structure 










Template SS confidence 



























   338.340.........350.........360.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions