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Job DescriptionP0AGD7
Confidence100.00%DateThu Jan 5 11:28:50 GMT 2012
Rank4Aligned Residues434
% Identity31%Templatec2j37W_
PDB info PDB header:ribosomeChain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs
Resolution8.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   8.10.........20.........30.........40.........50.........60.........70.........80.......
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Query Sequence  RLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMG
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Template Sequence  KITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVD
Template Known Secondary structure  TTTTTTT


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   910.........20.........30.........40.........50.........60.........70.........80........
 
   88.90.........100.........110.........120.........130.........140.........150.........160.......
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Query Sequence  EENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQK
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Template Sequence  PGVKAWTPTK. . GNVIMFVGLQGSGKTTTCSKLAYYYQRK. GWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMD
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   8990........ .100.........110.........120...... ...130.........140.........150.........160.....
 
   168.170.........180.........190.........200.........210.........220.........230.........240.......
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Query Sequence  PVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVL
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Template Sequence  PVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIV
Template Known Secondary structure  TT





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   168.170.........180.........190.........200.........210.........220.........230.........240.......
 
   248.250.........260.........270.........280.........290.........300.........310.........320.......
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Query Sequence  TKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGD
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Template Sequence  TKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE. LKLDDNEALIEKLKHGQ
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   248.250.........260.........270.........280.........290.........300......... 310.........320......
 
   328.330.........340.........350........ .360.........370.........380.........390.... .....400.
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Query Sequence  GFDLNDFLEQLRQMKNMGGMASLMGKLPGMG. QIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPEII. . . . . KGSRKRR
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Template Sequence  . FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQR
Template Known Secondary structure  .GGG










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   327..330.........340.........350.........360.........370.........380.........390.........400.....
 
   402.......410.........420.........430.........440......
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Query Sequence  IAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMM
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Template Sequence  VARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNV
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   406...410.........420.........430.........440.........450
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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