Return to main results Retrieve Phyre Job Id

Job DescriptionP0AGD7
Confidence96.31%DateThu Jan 5 11:28:50 GMT 2012
Rank361Aligned Residues89
% Identity20%Templatec1xpuB_
PDB info PDB header:transcription/rnaChain: B: PDB Molecule:rho transcription termination factor; PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb)
Resolution3.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.........120.........130.........140.........150.........160........ .170....
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Query Sequence  QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKP. . . VDIVNA
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Template Sequence  GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERP. . . EEVTEMQRLVKGEVVASTFDEPASRHVQVAEM
Template Known Secondary structure  TT

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   169170.........180.........190.........200.........210... ......220.........230.........240.....
 
   175....180 .........
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Query Sequence  ALKEAK. . . LKFYDVLLV
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Template Sequence  VIEKAKRLVEHKKDVIIL
Template Known Secondary structure  TT
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   246...250.........260...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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