Job Description P0AGD7 Confidence 96.31% Date Thu Jan 5 11:28:50 GMT 2012
Rank 361 Aligned Residues 89
% Identity 20% Template c1xpuB_
PDB info
PDB header: transcription/rnaChain: B: PDB Molecule: rho transcription termination factor;
PDBTitle: structural mechanism of inhibition of the rho transcription2 termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-3 dihydrobicyclomycin (fpdb)
Resolution 3.05 Å
Show / Hide SS confidence
Show / Hide Conservation and Alignment quality
   
98 . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . .
. 170 . . . .
Predicted Secondary structure  
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Query SS confidence  
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Query Sequence  
Q P P A V V L M A G L Q G A G K T T S V G K L G K F L R E K H K K K V L V V S A D V Y R P A A I K Q L E T L A E Q V G V D F F P S D V G Q K P .
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V D I V N A
Query Conservation  
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Template Conservation  
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Template Sequence  
G R G Q R G L I V A P P K A G K T M L L Q N I A Q S I A Y N H P D C V L M V L L I D E R P .
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E E V T E M Q R L V K G E V V A S T F D E P A S R H V Q V A E M
Template Known Secondary structure  
T T S S S S T T S . . . S S T T S
Template Predicted Secondary structure  
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Template SS confidence  
   
169 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . .
. . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . .
 
   
175 . . . . 180
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Predicted Secondary structure  
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Query SS confidence  
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Query Sequence  
A L K E A K .
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L K F Y D V L L V
Query Conservation  
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Template Conservation  
                 
Template Sequence  
V I E K A K R L V E H K K D V I I L
Template Known Secondary structure  
T T
Template Predicted Secondary structure  
Template SS confidence  
   
246 . . . 250 . . . . . . . . . 260 . . .
 
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf ] [Import into BibTeX ]