Job Description P0AGD7 Confidence 97.78% Date Thu Jan 5 11:28:50 GMT 2012 Rank 118 Aligned Residues 227 % Identity 14% Template c1szpC_ PDB info PDB header:dna binding protein Chain: C: PDB Molecule:dna repair protein rad51; PDBTitle: a crystal structure of the rad51 filament Resolution 3.25 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.										.
Predicted Secondary structure																							.																																																	.	.	.	.	.	.	.	.	.
Query SS confidence																							.																																																	.	.	.	.	.	.	.	.	.
Query Sequence		S	R	T	L	R	N	I	S	G	R	G	R	L	T	E	D	N	V	K	D	T	.	L	R	E	V	R	M	A	L	L	E	A	D	V	A	L	P	V	V	R	E	F	I	N	R	V	K	E	K	A	V	G	H	E	V	N	K	S	L	T	P	G	Q	E	F	V	K	I	V	.	.	.	.	.	.	.	.	.	R
Query Conservation																							.																																																	.	.	.	.	.	.	.	.	.
Alig confidence																							.									.	.	.																	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.																	.	.	.	.	.
Template Sequence		M	A	D	V	K	K	L	R	E	S	G	L	H	T	A	E	A	V	A	Y	A	P	R	K	D	L	L	E	I	K	.	.	.	G	I	S	E	A	K	A	D	K	L	L	N	E	A	A	R	.	.	.	.	.	L	V	P	M	G	F	V	T	A	A	D	F	H	M	R	R	S	E	L	I	C	L	T	T	G	S
Template Known Secondary structure										T	T	T			S							S		S					T	S	T	.	.	.	T			T	T	T	S									T	.	.	.	.	.	T	S			S														S						S
Template Predicted Secondary structure																																.	.	.																	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.				.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.						.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.
Query Sequence		N	E	L	V	A	A	M	G	E	E	N	Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	.	.	.	.	.	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q
Query Conservation																																																			.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.																															.	.	.	.	.																.	.
Template Conservation														.	.	.	.	.	.	.																																																			.	.
Template Sequence		K	N	L	D	T	L	L	G	G	G	V	E	.	.	.	.	.	.	.	T	G	S	I	T	E	L	F	G	E	F	R	T	G	K	S	Q	L	C	H	T	L	A	V	T	C	Q	I	P	L	D	I	G	G	G	E	G	K	C	L	Y	I	D	T	E	G	T	F	R	P	.	.	V	R	L	V	S	I	A	Q	R
Template Known Secondary structure									T	S	S			.	.	.	.	.	.	.	S	S	S							S	T	T	S	S												T	T	S		T	T	T	T			S	S							S	S	S				G	.	.	G	G	G
Template Predicted Secondary structure														.	.	.	.	.	.	.																																																			.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.								.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.
		155	.										.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.																																											.
Query SS confidence				.	.	.	.	.	.	.	.	.																																											.
Query Sequence		V	G	.	.	.	.	.	.	.	.	.	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	.	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M
Query Conservation				.	.	.	.	.	.	.	.	.																																											.
Alig confidence				.	.	.	.	.	.	.	.	.																																											.															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	G	L	D	P	D	D	A	L	N	N	V	A	Y	A	R	A	Y	N	A	D	H	Q	L	R	L	L	D	A	A	A	Q	M	M	S	E	S	R	F	S	L	I	V	V	D	S	V	M	A	L	Y	R	E	L	S	A	R	Q	M	H	L	A	K	F	M	R	A	L	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T								G	G	G								S	T	T									T							S										T	T	G	G	G			T															.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P	L	T	G	V	V	L	T	K	V	D	G	D	A	R	G	G	A	A	L	S	I	R	H	I	T	G	K	P	I	K	F	L	G	V	G	E	K	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	Q	R	L	A	D	Q	F	G	V	A	V	V	V	T	N	Q	V	.	.	.	.	.	G	G	N	I	M	A	H	S	S	T	T	R	L	G	F	K	K	G	K	G	C	Q	R	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.																		.	.	.	.	.										S									S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template SS confidence
											311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.						.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions