Job Description P0AGD7 Confidence 97.02% Date Thu Jan 5 11:28:50 GMT 2012
Rank 258 Aligned Residues 133
% Identity 14% Template c1sxjA_
PDB info
PDB header: replicationChain: A: PDB Molecule: activator 1 95 kda subunit;
PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna)
Resolution 2.85 Å
Show / Hide SS confidence
Show / Hide Conservation and Alignment quality
   
72 . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140 . . . . .
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Predicted Secondary structure  
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Query SS confidence  
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Query Sequence  
Q E F V K I V R N E L V A A M G E E N Q T L N L A A Q P P A V V L M A G L Q G A G K T T S V G K L G K F L R E K H K K K V L V V S A D V Y R P A A I .
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K Q L E
Query Conservation  
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Alig confidence  
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Template Conservation  
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Template Sequence  
M K L K N W L A N W E N S K K N S F K H A G K D G S G V F R A A M L Y G P P G I G K T T A A H L V A Q E L .
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G Y D I L E Q N A S D V R S K T L L N A G V K
Template Known Secondary structure  
T T T T T T S T T S S S T T S S T . . . . T T T S T G G
Template Predicted Secondary structure  
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Template SS confidence  
   
318 . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350 . . . . . . . . . 360 . . . . . . . . . 370
. . . . . . . . . 380 . . . . . . . . . 390 . . .
 
   
150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . .
. . . . . . . 200 . . . . . . . . . 210 . . . . . . . . . 220 . .
Predicted Secondary structure  
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Query SS confidence  
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Query Sequence  
T L A E Q V G V D F F P S D V G Q K P V D I V N A A L K E A K L K F Y D V L L V D T A .
G R L H V D E A M M D E I K Q V H A S I N P V E T L F V V D
Query Conservation  
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Alig confidence  
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Template Conservation  
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Template Sequence  
N A L D N M S V V G Y F K H Q N L N .
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G K H F V I I M D E V D G M S G G D R G G V G Q L A Q F C R K T S T P L I L I C N E
Template Known Secondary structure  
G G T T S T T T T T S S . . . . . . . . . . . . . . T T S S G G G T T S T T S S S
Template Predicted Secondary structure  
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Template SS confidence  
   
394 . . . . . 400 . . . . . . . . . 410 .
. . . . . . . . 420 . . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . .
 
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf ] [Import into BibTeX ]