Job Description P0AGD7 Confidence 100.00% Date Thu Jan 5 11:28:50 GMT 2012 Rank 5 Aligned Residues 425 % Identity 34% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	D	R	L	S	R	T	L	R	N	I	S	G	R	G	R	L	T	E	D	N	V	K	D	T	L	R	E	V	R	M	A	L	L	E	A	D	V	A	L	P	V	V	R	E	F	I	N	R	V	K	E	K	A	V	G	H	E	V	N	K	S	L	T	P	G	Q	E	F	V	K	I	V	R	N	E	L	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	L	E	N	I	R	D	A	V	R	K	F	L	T	G	S	T	P	Y	E	K	A	V	D	E	F	I	K	D	L	Q	K	S	L	I	S	S	D	V	N	V	K	L	V	F	S	L	T	A	K	I	K	E	R	L	N	K	E	K	P	P	S	V	L	E	R	K	E	W	F	I	S	I	V	Y	D	E	L	S	K
Template Known Secondary structure				T	T	T	T	T								S	S	S		S	T																T	S	S																		T	T					S	S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	G	E	E	N	Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V
Query Conservation
Alig confidence																																											.
Template Conservation																																											.
Template Sequence		L	F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	.	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N
Template Known Secondary structure			T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	T										.	T	T	S					B						S	S	S		S											T	T							S	S
Template Predicted Secondary structure																																											.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	.	.	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P	L
Query Conservation																																					.	.
Alig confidence																																					.	.
Template Conservation
Template Sequence		N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K	A	Y	D	L	A	S	R	F	H	Q	A	S	P	I
Template Known Secondary structure					T	T													T	T		S									S			S	S	T																		S								T	T	T	G	G	G	G									T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	V	V	L	T	K	V	D	G	D	A	R	G	G	A	A	L	S	I	R	H	I	T	G	K	P	I	K	F	L	G	V	G	E	K	T	E	A	L	E	P	F	H	P	D	R	I	A	S	R	I	L	G	M	G	D	V	L	S	L	I	E	D	I	E	S	K	V	D	R	A	Q	A	E	K	L	A	S	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	S	V	I	I	T	K	M	D	G	T	A	K	G	G	G	A	L	S	A	V	V	A	T	G	A	T	I	K	F	I	G	T	G	E	K	I	D	E	L	E	T	F	N	A	K	R	F	V	S	R	I	L	G	M	G	D	I	E	S	I	L	E	K	V	K	G	L	E	E	Y	D	K	I	Q	K	K	M	E	D
Template Known Secondary structure									S	S	S		S			T								T	T	T			B						S	S	S	T	T							T							T	T					T											T	T	T	T	T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		323	.			.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.				.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure				.	.																																													.	.	.
Query SS confidence				.	.																																													.	.	.
Query Sequence		L	K	.	.	K	G	D	G	F	D	L	N	D	F	L	E	Q	L	R	Q	M	K	N	M	G	G	M	A	S	L	M	G	K	L	P	G	M	G	Q	I	P	D	N	V	K	S	Q	M	.	.	.	D	D	K	V	L	V	R	M	E	A	I	I	N	S	M	T	M	K	E	R	A	K	P	E	I	I	K	G	S
Query Conservation				.	.																																													.	.	.
Alig confidence				.	.				.																																									.	.	.
Template Conservation									.
Template Sequence		V	M	E	G	K	G	K	.	L	T	L	R	D	V	Y	A	Q	I	I	A	L	R	K	M	G	P	L	S	K	V	L	Q	H	I	P	G	L	G	I	M	L	P	T	P	S	E	D	Q	L	K	I	G	E	E	K	I	R	R	W	L	A	A	L	N	S	M	T	Y	K	E	L	E	N	P	N	I	I	D	K	S
Template Known Secondary structure		S	S	S	S				.		S	T	T												S	S		S	T						S			S	S		S	S	S			S	S	S	S	S				T	T	T					T	T	T	T	T	T	S		T	G	G	G	G	S		S				S
Template Predicted Secondary structure									.
Template SS confidence
		320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	R	R	I	A	A	G	C	G	M	Q	V	Q	D	V	N	R	L	L	K	Q	F	D	D	M	Q	R	M	M	K	K	M	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	M	R	R	I	A	E	G	S	G	L	E	V	E	E	V	R	E	L	L	E	W	Y	N	N	M	N	R	L	L	K	M	V	K
Template Known Secondary structure										T	T			G	G	G	T															T
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.