Job Description P0AGD7 Confidence 97.46% Date Thu Jan 5 11:28:50 GMT 2012 Rank 176 Aligned Residues 127 % Identity 23% Template c1mj1A_ PDB info PDB header:ribosome Chain: A: PDB Molecule:elongation factor tu; PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome Resolution 13.00 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																																													.	.	.
Query SS confidence																																																													.	.	.
Query Sequence		A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	.	.	.	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	D	I	V
Query Conservation																																																													.	.	.
Alig confidence																																						.	.	.	.	.	.																		.	.	.												.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Sequence		R	T	K	R	H	V	N	V	G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	L	T	Y	V	A	A	A	E	N	R	N	V	.	.	.	.	.	.	E	V	K	D	Y	G	D	I	D	K	A	R	E	E	R	A	R	G	I	T	I	N	T	A	H	V	E	Y	E	T	A	.	.	.	.	.	.	.
Template Known Secondary structure				S										S	T	T	S	S																S	T	T		.	.	.	.	.	.									S		S						T	T	S			S									S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																						.	.	.	.	.	.																																.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.							.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.
Predicted Secondary structure																																																								.																					.	.
Query SS confidence																																																								.																					.	.
Query Sequence		N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	.	Q	D	A	A	N	T	A	K	A	F	N	E	A	L	P	L	T	G	V	V	.	.	L	T	K
Query Conservation																																																								.																					.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.																.																					.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	K	R	H	Y	S	H	V	D	C	R	G	H	A	D	Y	I	K	N	M	I	T	G	A	.	.	.	.	.	.	A	Q	M	D	G	A	I	L	V	V	S	A	A	D	G	R	M	R	Q	T	R	E	H	I	L	L	A	R	Q	V	G	V	R	Y	I	V	V	F	M	N	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	S											S	G	G	G									.	.	.	.	.	.	T	T		S	S							T	T	T		S														T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template SS confidence
												74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D
Template Known Secondary structure		G	G
Template Predicted Secondary structure
Template SS confidence
		138	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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