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Job DescriptionP0AGD7
Confidence100.00%DateThu Jan 5 11:28:50 GMT 2012
Rank9Aligned Residues287
% Identity36%Templatec1j8yF_
PDB info PDB header:signaling proteinChain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
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Query Sequence  MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRN
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Template Sequence  LLDN. . . . LRDTVRKFLTGSSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYD
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   3... ...10.........20.........30.........40.........50.........60.........70........
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  ELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF
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Template Sequence  ELSNLFGGDKEPKVIPDKIPYVIMLVGVQG. . . . TTAGKLAYFYKKK. GFKVGLVGADVYRPAALEQLQQLGQQIGVPVY
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   7980.........90.........100........ .110.........120. ........130.........140.........150...
 
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Query Sequence  PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDE. . AMMDEIKQVHASINPVETLFVVDAMTGQDAANTAKAFNE
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Template Sequence  GEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQ
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   158.160.........170.........180.........190.........200.........210.........220.........230.......
 
   239240.........250.........260.........270.........280.........290......
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Query Sequence  ALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILG
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Template Sequence  ASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIGTGEKIDELEVFNPRRFVARLHH
Template Known Secondary structure 
TT
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   238.240.........250.........260.........270.........280.........290.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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