Job Description P0A881 Confidence 84.12% Date Thu Jan 5 11:07:08 GMT 2012 Rank 128 Aligned Residues 58 % Identity 17% Template c3t72o_ PDB info PDB header:transcription/dna Chain: O: PDB Molecule:pho box dna (strand 1); PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex Resolution 4.33 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	L	L	K	N	A	Y	Q	N	D	L	H	L	P	L	L	N	L	M	L	T	P	D	E	R	E	A	L	G	T	R	V	R	I	V	E	E	L	L	R	G	E	M	S	Q	R	E	L	K	N	E	L	G	A	G	I	A	T	I	T	R
Query Conservation
Alig confidence																					.																		.	.	.
Template Conservation																					.																		.	.	.
Template Sequence		M	D	S	A	T	T	E	S	L	R	A	A	T	H	D	V	L	A	G	.	L	T	A	R	E	A	K	V	L	R	M	R	F	G	I	D	M	.	.	.	N	T	D	Y	T	L	E	E	V	G	K	Q	F	D	V	T	R	E	R	I	R	Q
Template Known Secondary structure																					.	S								T	T	T	T	T	S	S	S	S	.	.	.		S												S	S
Template Predicted Secondary structure																					.																		.	.	.
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550		.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.				.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions