Job Description P0A881 Confidence 92.04% Date Thu Jan 5 11:07:08 GMT 2012 Rank 57 Aligned Residues 89 % Identity 15% Template c3mzyA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	S	P	Y	S	A	A	M	A	E	Q	R	H	Q	E	W	L	R	F	V	D	L	L	K	N	A	Y	Q	N	D	L	H	L	P	L	L	N	L	M	L	T	P	D	E	R	E	A	L	G	T	R	V	R	I	V	E	E	L	L	R	G	E	M	S	Q	R	E	L	K	N	E	L	G	A	G	I	A	T	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	S	S	F	S	S	F	A	F	L	C	I	R	R	E	X	I	S	A	I	R	K	A	N	T	Q	K	E	E	A	Y	L	L	K	E	E	I	E	E	F	K	K	F	S	E	N	N	F	S	K	F	E	K	E	V	L	T	Y	L	I	R	G	Y	S	Y	R	E	I	A	T	I	L	S	K	N	L	K	S	I
Template Known Secondary structure		T	T	S																																														S												T	T	T											T
Template Predicted Secondary structure
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		83					.	.	.	.	.	.	90	.
Predicted Secondary structure			.	.	.	.
Query SS confidence			.	.	.	.
Query Sequence		T	.	.	.	.	R	G	S	N	S	L	K	A
Query Conservation			.	.	.	.
Alig confidence			.	.	.	.
Template Conservation
Template Sequence		D	N	T	I	Q	R	I	R	K	K	S	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions