Job Description P0A881 Confidence 33.81% Date Thu Jan 5 11:07:08 GMT 2012 Rank 283 Aligned Residues 65 % Identity 17% Template c3iydF_ PDB info PDB header:transcription/dna Chain: F: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex Resolution 19.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		D	L	L	K	N	A	Y	Q	N	D	L	H	L	P	L	L	N	L	M	L	T	P	D	E	R	E	A	L	G	T	R	V	R	I	V	E	E	L	L	R	G	E	M	S	Q	R	E	L	K	N	E	L	G	A	G	I	A	T	I	T	R	G	.	S	N	S	L	K	A	A
Query Conservation																																																																.
Alig confidence																				.																		.	.	.																								.
Template Conservation																				.																		.	.	.
Template Sequence		D	S	A	T	T	E	S	L	R	A	A	T	H	D	V	L	A	G	.	L	T	A	R	E	A	K	V	L	R	M	R	F	G	I	D	M	.	.	.	N	T	D	H	T	L	E	E	V	G	K	Q	F	D	V	T	R	E	R	I	R	Q	I	E	A	K	A	L	R	K	L
Template Known Secondary structure								T	T	S	S	S					T	T	S	.	S													T	S	S	S	.	.	.					S	T	T	G	G	G	T	T	T	S	S		S	S											T	T	T
Template Predicted Secondary structure																				.																		.	.	.
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550		.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.				.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions