Job Description P0A881 Confidence 38.99% Date Thu Jan 5 11:07:08 GMT 2012 Rank 267 Aligned Residues 57 % Identity 23% Template c2xsdC_ PDB info PDB header:transcription/dna Chain: C: PDB Molecule:pou domain, class 3, transcription factor 1; PDBTitle: crystal structure of the dimeric oct-6 (pou3f1) pou domain2 bound to palindromic more dna Resolution 2.05 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.							.	.	80	.	.	.	.	.	.	.							.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																				.	.	.	.	.	.											.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.											.	.	.	.	.	.
Query Sequence		T	P	D	E	R	E	A	L	G	T	R	V	R	I	V	E	E	L	L	R	G	E	M	S	Q	R	E	L	K	N	E	L	G	A	.	.	.	.	.	.	G	I	A	T	I	T	R	G	S	N	.	.	.	.	.	.	S	L	K	A	A	P	V	E	L	R	Q	W	L	E	E
Query Conservation																																				.	.	.	.	.	.											.	.	.	.	.	.
Alig confidence																		.	.																	.	.	.	.	.	.											.	.	.	.	.	.
Template Conservation																		.	.
Template Sequence		S	S	D	D	L	E	Q	F	A	K	Q	F	K	Q	R	R	.	.	I	K	L	G	F	T	Q	A	D	V	G	L	A	L	G	T	L	Y	G	N	V	F	S	Q	T	T	I	C	R	F	E	A	L	Q	L	S	F	K	N	M	C	K	L	K	P	L	L	N	K	W	L	E	E
Template Known Secondary structure																		.	.			T	T															S													T	T		S	B
Template Predicted Secondary structure																		.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions