Job Description P0A881 Confidence 60.33% Date Thu Jan 5 11:07:08 GMT 2012 Rank 204 Aligned Residues 57 % Identity 16% Template c1l9uH_ PDB info PDB header:transcription Chain: H: PDB Molecule:sigma factor siga; PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution Resolution 4.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	L	K	N	A	Y	Q	N	D	L	H	L	P	L	L	N	L	M	L	T	P	D	E	R	E	A	L	G	T	R	V	R	I	V	E	E	L	L	R	G	E	M	S	Q	R	E	L	K	N	E	L	G	A	G	I	A	T	I	T	R
Query Conservation
Alig confidence																				.																		.	.	.
Template Conservation																				.																		.	.	.
Template Sequence		E	A	A	A	Q	S	L	L	S	E	E	L	E	K	A	L	S	K	.	L	S	E	R	E	A	M	V	L	K	L	R	K	G	L	I	D	.	.	.	G	R	E	H	T	L	E	E	V	G	A	Y	F	G	V	T	R	E	R	I	R	Q
Template Known Secondary structure																	T	T	S	.	S		T	T	T	T					T	T	S	S	T	T	S	.	.	.	S										T	T	S		S
Template Predicted Secondary structure																				.																		.	.	.
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.		.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.				.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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