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Job DescriptionP13000
Confidence99.30%DateThu Jan 5 11:33:19 GMT 2012
Rank45Aligned Residues172
% Identity12%Templatec2j37W_
PDB info PDB header:ribosomeChain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs
Resolution8.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPT
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Template Sequence  GNVIMFVGLQ. GSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFD. . . . . . QLKQNATKARIPFYGS. . . . . . . . . . .
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Query Sequence  SPHIISAQEGRPIESLVMSAGLRAL. EQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA
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Template Sequence  . . . . . . . . YTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAK
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   163......170.........180.........190.........200.........210.........220.........230....
 
   161........170.........180.........190.........200...
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Query Sequence  QVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGE
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Template Sequence  AFKDKVD. . VASVIVTKLDGHAKGGGAL. . SAVAATKSPIIFI
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   235....240. ........250.........260 .........270...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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