Job Description P13000 Confidence 99.03% Date Thu Jan 5 11:33:19 GMT 2012 Rank 52 Aligned Residues 169 % Identity 15% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		S	K	R	Y	F	V	T	G	T	D	T	E	V	G	K	T	V	A	S	C	A	L	L	Q	A	A	K	A	A	.	G	Y	R	T	A	G	Y	K	P	V	A	S	G	S	E	K	T	P	E	G	L	R	N	S	D	A	L	A	L	Q	R	N	S	S	L	Q	L	D	Y	A	T	V	N	P	Y	T	F	A	E	P
Query Conservation																															.
Alig confidence												.																			.																				.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Conservation												.																																							.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Sequence		P	A	V	V	L	M	A	G	L	Q	.	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	.	.	.	.	.	.	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S								S	S	.	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S				.	.	.	.	.	.								T	T							.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.																																							.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		T	S	P	H	I	I	S	A	Q	E	G	R	P	I	E	S	L	V	M	S	A	G	L	R	A	L	.	E	Q	Q	A	D	W	V	L	V	E	G	A	G	G	W	F	T	P	L	S	D	T	F	T	F	A	D	W	V	T	Q	E	Q	L	P	V	I	L	V	V	G	V	K	L	G	C	I	N	H	A	M	L	T
Query Conservation																												.
Alig confidence		.	.	.	.	.	.	.	.	.																		.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	D	A	A	N	T	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	S	S				T	T													T	T		S											S	S																		S								T	T	T	G	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	V	I	Q	H	A	G	L	T	L	A	G	W	V	A	N	D	V	T	P	P	G	K	R	H	A	E	Y	M	T	T	L	T	R	M	I	P	A	P	L
Query Conservation
Alig confidence								.	.																						.	.
Template Conservation								.	.																						.	.
Template Sequence		K	A	F	N	E	A	.	.	L	P	L	T	G	V	V	L	T	K	V	D	G	D	A	R	G	G	A	A	L	.	.	S	I	R	H	I	T	G	K	P	I
Template Known Secondary structure						T	T	.	.		S	S								S	S	S		S			T				.	.					T	T	T			B
Template Predicted Secondary structure								.	.																						.	.
Template SS confidence
		234	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions