Job Description P13000 Confidence 97.71% Date Thu Jan 5 11:33:19 GMT 2012 Rank 71 Aligned Residues 167 % Identity 13% Template c1j8yF_ PDB info PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	R	Y	F	V	T	G	T	D	T	E	V	G	K	T	V	A	S	C	A	L	L	Q	A	A	K	A	A	G	Y	R	T	A	G	Y	K	P	V	A	S	G	S	E	K	T	P	E	G	L	R	N	S	D	A	L	A	L	Q	R	N	S	S	L	Q	L	D	Y	A	T	V	N	P	Y	T	F	A	E	P	T
Query Conservation
Alig confidence													.	.	.	.	.																																	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.																																	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Y	V	I	M	L	V	G	V	Q	G	.	.	.	.	.	T	T	A	G	K	L	A	Y	F	Y	K	K	K	G	F	K	V	G	L	V	G	A	D	V	Y	R	P	A	A	L	E	Q	.	.	.	.	.	.	L	Q	Q	L	G	Q	Q	I	G	V	P	V	Y	G	E	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S								S			.	.	.	.	.													T	T											S	S							.	.	.	.	.	.									T							.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.																																	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.						.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140							.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																											.																					.	.	.
Query SS confidence																											.																					.	.	.
Query Sequence		S	P	H	I	I	S	A	Q	E	G	R	P	I	E	S	L	V	M	S	A	G	L	R	A	L	.	E	Q	Q	A	D	W	V	L	V	E	G	A	G	G	W	F	T	P	L	S	.	.	.	D	T	F	T	F	A	D	W	V	T	Q	E	Q	L	P	V	I	L	V	V	G	V	K	L	G	C	I	N	H	A	M
Query Conservation																											.																					.	.	.
Alig confidence		.	.	.	.	.	.	.	.																		.																					.	.	.																											.
Template Conservation		.	.	.	.	.	.	.	.																																																																				.
Template Sequence		.	.	.	.	.	.	.	.	P	G	E	K	D	V	V	G	I	A	K	R	G	V	E	K	F	L	S	E	K	M	E	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	A	A	L	L	E	E	M	K	N	I	Y	E	A	I	K	P	D	E	V	T	L	V	I	D	A	S	I	G	Q	.	K	A	Y	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	T	T																		T	T		S									S			T	T																			S								G	G	G	G	G	.	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																				.
Template SS confidence
										160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	A	Q	V	I	Q	H	A	G	L	T	L	A	G	W	V	A	N	D	V	T	P	P	G	K	R	H	A	E	Y	M	T	T	L	T	R	M	I	P	A	P	L	L	G	E
Query Conservation
Alig confidence									.	.																							.	.
Template Conservation									.	.																							.	.
Template Sequence		L	A	S	K	F	N	Q	.	.	A	S	K	I	G	T	I	I	I	T	K	M	D	G	T	A	K	G	G	G	A	L	.	.	S	A	V	A	A	T	G	A	T	I	K	F	I
Template Known Secondary structure									.	.			T	T								T	T	S		S							.	.					T	T	T
Template Predicted Secondary structure									.	.																							.	.
Template SS confidence
		231	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.			260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions