Job Description P25741 Confidence 99.40% Date Thu Jan 5 11:42:28 GMT 2012 Rank 173 Aligned Residues 188 % Identity 14% Template c3rgfA_ PDB info PDB header:transferase,transcription Chain: A: PDB Molecule:cyclin-dependent kinase 8; PDBTitle: crystal structure of human cdk8/cycc Resolution 2.20 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.					.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence		L	A	T	L	W	R	G	K	D	A	F	A	E	V	K	K	L	N	G	E	V	F	R	E	L	E	T	R	R	T	L	R	F	E	.	.	.	.	L	S	G	K	S	Y	F	L	K	W	H	K	G	T	T	L	K	E	I	I	K	N	L	L	S	L	R	M	P	V	L	G	A	D	R	E	W	H	A	I	H	R
Query Conservation																																				.	.	.	.
Alig confidence																										.	.	.	.	.						.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	K	L	S	S	E	R	E	R	V	E	D	L	F	E	Y	E	G	C	K	V	G	H	.	.	.	.	.	V	Y	K	A	K	R	K	D	G	K	D	D	K	D	Y	A	L	K	Q	I	E	G	T	G	I	S	M	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	C	R	E	I	A	L	L	R	E
Template Known Secondary structure																			S	S						.	.	.	.	.							S	S	S	S											S	S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.						30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.														.	.	.	60	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	D	V	G	V	D	T	M	K	G	I	G	F	G	E	K	G	L	N	P	L	T	R	A	S	F	I	I	T	E	D	L	T	P	T	I	S	L	E	D	Y	C	A	D	W	A	V	N	P	P	D	I	R	V	K	R	M	L	I	A	R	V	A	T	M	V	R	K	M	H	T	A	G	I	N	H	R	D	C
Query Conservation
Alig confidence																		.	.	.	.	.	.																											.
Template Conservation																		.	.	.	.	.	.																											.
Template Sequence		L	K	H	P	N	V	I	S	L	Q	K	V	F	L	S	H	.	.	.	.	.	.	A	D	R	K	V	W	L	L	F	D	Y	A	E	H	D	L	W	H	I	I	K	F	H	R	A	S	.	K	L	P	R	G	M	V	K	S	L	L	Y	Q	I	L	D	G	I	H	Y	L	H	A	N	W	V	L	H	R	D	L
Template Known Secondary structure					T	T	B										T	.	.	.	.	.	.	T	T	T										S														.																								T	T
Template Predicted Secondary structure																		.	.	.	.	.	.																											.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.							.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	C	H	F	L	L	H	L	P	F	T	G	R	E	D	E	L	K	I	S	V	I	D	L	H	R	A	Q	I	R	A	K	V	P	R	R	W	R	D	K	D	L	I	G	L	Y	F	S	S	M	N	I	G	L	T	Q	R	D	I	W	R	F	M	K	V	Y	F
Query Conservation
Alig confidence														.	.	.																				.	.	.	.	.	.	.	.
Template Conservation														.	.	.																				.	.	.	.	.	.	.	.
Template Sequence		K	P	A	N	I	L	V	M	G	E	G	P	.	.	.	E	R	G	R	V	K	I	A	D	M	G	F	A	R	V	T	F	W	Y	.	.	.	.	.	.	.	.	R	A	P	E	L	L	L	G	A	R	H	Y	T	K	A	I	D	I	W	A	I	G	C	I	F	A
Template Known Secondary structure			G	G	G						S	S	T	.	.	.	T	T	T							T	T							T	T	.	.	.	.	.	.	.	.							T	T			S
Template Predicted Secondary structure														.	.	.																				.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.									.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions