Job Description P25741 Confidence 98.62% Date Thu Jan 5 11:42:28 GMT 2012 Rank 260 Aligned Residues 163 % Identity 17% Template c3r78B_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminoglycoside 3'-phosphotransferase apha1-iab; PDBTitle: crystal structure of the aminoglycoside phosphotransferase aph(3')-ia,2 atp-bound Resolution 2.40 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																		.	.
Query SS confidence																		.	.
Query Sequence		V	F	R	E	L	E	T	R	R	T	L	R	F	E	L	S	.	.	G	K	S	Y	F	L	K	W	H	K	G	T	T	L	K	E	I	I	K	N	L	L	S	L	R	M	P	V	L	G	A	D	R	E	W	H	A	I	H	R	L	S	D	V	G	V	D	T	M	K	G	I	G	F	G	E	K	G	L	N	P	L
Query Conservation																		.	.
Alig confidence																		.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.															.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.															.	.	.	.	.	.
Template Sequence		D	N	V	G	Q	S	G	A	T	I	Y	R	L	Y	G	K	P	N	A	P	E	L	F	L	K	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	S	V	A	N	D	V	T	D	E	X	V	R	L	N	W	L	.	T	A	F	X	P	L	P	T	I	K	H	F	I	R	.	.	.	.	.	.
Template Known Secondary structure				S			S	S										T	T	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.		T																	.	T	T	T	S											.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.															.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.															.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	R	A	S	F	I	I	T	E	D	L	T	P	T	I	S	L	E	D	Y	C	A	D	W	A	V	N	P	P	D	I	R	V	K	R	M	L	I	A	R	V	A	T	M	V	R	K	M	H	T	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.
Template Sequence		T	P	D	D	A	W	L	L	T	T	A	I	P	G	K	T	A	F	Q	V	L	E	E	.	.	.	.	.	.	Y	P	D	S	G	E	N	I	V	D	A	L	A	V	F	L	R	R	L	H	S	I	P	V	C	N	C	P	F	N	S	D	R	V	F	R	L	A	Q	A	Q	S	R	X	N	N	G	L	V	D	A
Template Known Secondary structure			S	S											S										.	.	.	.	.	.		G	G	G																		S		G	G	G				B																T	T				G
Template Predicted Secondary structure																									.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.							.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
																																158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	N	H	R	D	C	Y	I	C	H	F	L	L	H	L	P	F	T	G	R	E	D	E	L	K	I	S	V	I	D	L	H	R	A	Q	I	R	A	K	V	P	R	R	W	R	D	K	D	L	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.																.	.	.	.	.	.
Template Sequence		S	D	F	D	D	E	R	N	G	W	P	V	E	Q	V	W	K	E	X	H	K	L	L	P	F	S	P	D	S	V	V	T	H	G	D	F	S	L	D	N	L	I	F	D	E	G	K	L	.	.	.	.	.	.	.	I	G	C	I	D	V	G	R	V	G	I	A	D	R	Y	.	.	.	.	.	.	Q	D	L	A
Template Known Secondary structure		G	G			G	G	G	T	T												T	T												S				G	G	G					T	T			.	.	.	.	.	.	.							T	T						T		.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.																.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.								.	.	.	.	.	.	.	.	220	.	.	.	.	.	.							.	.	.	230
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	Y	F	S	S	M	N	I	G	L	T	Q	R	D	I	W	R	F	M	K	V	Y	F	G
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		I	L	W	N	C	L	G	E	.	.	F	S	P	S	L	Q	K	R	L	F	Q	K	Y	G	I
Template Known Secondary structure								T	T	.	.	T													T
Template Predicted Secondary structure										.	.
Template SS confidence
		231	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions