Job Description P25741 Confidence 99.80% Date Thu Jan 5 11:42:28 GMT 2012 Rank 35 Aligned Residues 231 % Identity 13% Template c2v62A_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine/threonine-protein kinase vrk2; PDBTitle: structure of vaccinia-related kinase 2 Resolution 1.7 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.													.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																								.	.												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	G	E	V	F	R	E	L	E	T	R	R	T	L	R	F	E	L	S	G	K	S	Y	F	L	K	W	H	K	G	T	T	L	K	E	I	I	K	.	.	N	L	L	S	L	R	M	P	V	L	G	.	.	.	.	.	.	.	.	.	.	.	.	A	D	R	E	W	H	A	I	H	R	L	S	D	V	G	V	D
Query Conservation																																								.	.												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.																	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.
Template Sequence		E	G	K	V	L	D	D	M	E	G	N	Q	W	V	L	G	K	K	I	L	.	.	I	Y	L	A	F	P	T	N	K	P	E	K	D	A	R	H	V	V	K	V	E	Y	Q	E	G	P	L	F	S	E	L	K	F	Y	Q	R	V	A	K	K	D	C	I	K	K	W	I	E	R	K	Q	L	D	Y	L	G	I	P
Template Known Secondary structure		T	T						T	T	S											.	.							S	S	S		G	G	G																																						T		S
Template Predicted Secondary structure																						.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	K	G	I	G	F	G	E	K	G	L	N	P	L	T	R	A	S	F	I	I	T	E	D	L	T	P	T	I	S	L	E	D	Y	C	A	D	W	A	V	N	P	P	D	I	R	V	K	R	M	L	I	A	R	V	A	T	M	V	R	K	M	H	T	A	G	I	N	H	R	D	C	Y	I	C	H	F	L	L
Query Conservation
Alig confidence												.	.	.	.														.											.	.
Template Conservation												.	.	.	.														.											.	.
Template Sequence		L	F	Y	G	S	G	L	T	E	F	.	.	.	.	K	G	R	S	Y	R	F	M	V	M	E	R	L	.	G	I	D	L	Q	K	I	S	G	Q	.	.	N	G	T	F	K	K	S	T	V	L	Q	L	G	I	R	M	L	D	V	L	E	Y	I	H	E	N	E	Y	V	H	G	D	I	K	A	A	N	L	L	L
Template Known Secondary structure											S	.	.	.	.	S	S												.									B	G	.	.	G	G	B																							T	T				S			S	G	G	G
Template Predicted Secondary structure												.	.	.	.														.											.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		171	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.						220	.	.	.	.	.	.	.	.	.						230	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.																																											.	.	.	.	.											.	.	.	.	.
Query SS confidence									.	.																																											.	.	.	.	.											.	.	.	.	.
Query Sequence		H	L	P	F	T	G	R	.	.	E	D	E	L	K	I	S	V	I	D	L	H	R	A	Q	I	R	A	K	V	P	R	R	W	R	D	K	D	L	I	G	L	Y	F	S	S	M	N	I	G	L	T	.	.	.	.	.	Q	R	D	I	W	R	F	M	K	V	.	.	.	.	.	Y	F	G	M	P	L	R	K	I
Query Conservation									.	.																																											.	.	.	.	.											.	.	.	.	.
Alig confidence									.	.										.																																	.	.	.	.	.											.	.	.	.	.
Template Conservation																				.
Template Sequence		G	Y	K	N	P	D	Q	V	Y	L	A	D	Y	G	L	S	Y	R	.	Y	C	P	N	G	N	H	K	Q	Y	Q	E	N	P	R	K	G	H	N	G	T	I	E	F	T	S	L	D	A	H	K	G	V	A	L	S	R	R	S	D	V	E	I	L	G	Y	C	M	L	R	W	L	C	G	K	L	P	W	E	Q	N
Template Known Secondary structure			S	S	S	T	T	S							T	T				.	S	S	G	G	G									G	G	G		S		S		T	T	T								T																						S	S		T	T	G	G	G
Template Predicted Secondary structure																				.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	L	E	Q	N	L	L	N	M	A	S	V	K	A	E	R	I	K	E	R	T	Q	R	K	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	D	P	V	A	V	Q	T	A	K	T	N	L	L	D	E	L	P	Q	S	V	L	K	W	A	P
Template Known Secondary structure		T	T															T	T	T							S
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions