Job Description P31134 Confidence 100.00% Date Thu Jan 5 11:47:18 GMT 2012 Rank 3 Aligned Residues 347 % Identity 35% Template c2it1B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin PDBTitle: structure of ph0203 protein from pyrococcus horikoshii Resolution 1.94 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	I	R	N	L	T	K	S	Y	D	G	Q	H	A	V	D	D	V	S	L	T	I	Y	K	G	E	I	F	A	L	L	G	A	S	G	C	G	K	S	T	L	L	R	M	L	A	G	F	E	Q	P	S	A	G	Q	I	M	L	D	G	V	D	L	S	Q	V	P	P	Y	L	R	P	I	N	M	M	F	Q	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	L	E	N	I	V	K	K	F	G	N	F	T	A	L	N	N	I	N	L	K	I	K	D	G	E	F	M	A	L	L	G	P	S	G	S	G	K	S	T	L	L	Y	T	I	A	G	I	Y	K	P	T	S	G	K	I	Y	F	D	E	K	D	V	T	E	L	P	P	K	D	R	N	V	G	L	V	F	Q	N
Template Known Secondary structure												T	T													T	T									T	T	S	S										T	S	S			S							T	T				T	T	S						T						T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	L	F	P	H	M	T	V	E	Q	N	I	A	F	G	L	K	Q	D	K	L	P	K	A	E	I	A	S	R	V	N	E	M	L	G	L	V	H	M	Q	E	F	A	K	R	K	P	H	Q	L	S	G	G	Q	R	Q	R	V	A	L	A	R	S	L	A	K	R	P	K	L	L	L	L	D	E	P	M	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	A	L	Y	P	H	M	T	V	Y	K	N	I	A	F	P	L	E	L	R	K	A	P	R	E	E	I	D	K	K	V	R	E	V	A	K	M	L	H	I	D	K	L	L	N	R	Y	P	W	Q	L	S	G	G	Q	Q	Q	R	V	A	I	A	R	A	L	V	K	E	P	E	V	L	L	L	D	E	P	L	S	N
Template Known Secondary structure						T	T	S													T	T																	T	T		G	G	G	T	T	S		G	G	G	S															T	T			S						S	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	K	K	L	R	D	R	M	Q	L	E	V	V	D	I	L	E	R	V	G	V	T	C	V	M	V	T	H	D	Q	E	E	A	M	T	M	A	G	R	I	A	I	M	N	R	G	K	F	V	Q	I	G	E	P	E	E	I	Y	E	H	P	T	T	R	Y	S	A	E	F	I	G	S	V	N	V	F	E	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	A	L	L	R	L	E	V	R	A	E	L	K	R	L	Q	K	E	L	G	I	T	T	V	Y	V	T	H	D	Q	A	E	A	L	A	M	A	D	R	I	A	V	I	R	E	G	E	I	L	Q	V	G	T	P	D	E	V	Y	Y	K	P	K	Y	K	F	V	G	G	F	L	G	N	P	P	M	N	F	V	E
Template Known Secondary structure		S																				T								S										S							T	T														S		S	B							S	B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	E	R	Q	E	D	G	L	V	L	D	S	P	G	L	V	H	P	L	K	V	D	A	D	A	S	V	V	D	N	V	P	V	H	V	A	L	R	P	E	K	I	M	L	C	E	E	P	P	A	N	G	C	N	F	A	V	G	E	V	I	H	I	A	Y	L	G	D	L	S	V	Y	H	V	R	L	K	S	G
Query Conservation
Alig confidence																																																						.	.	.	.																							.
Template Conservation																																																						.	.	.	.																							.
Template Sequence		A	K	V	E	D	G	K	L	V	I	T	E	K	S	K	L	P	I	P	K	Q	Y	V	E	I	V	K	E	T	G	I	T	E	V	I	I	G	F	R	P	H	D	A	E	I	V	K	G	E	G	E	G	.	.	.	.	I	V	G	E	V	Y	S	F	E	P	L	G	R	E	Q	I	V	T	V	S	V	N	.	D
Template Known Secondary structure						T	T				S	S	S	S							G	G	G								T										G	G	G						S	S		S	S	.	.	.	.												S	S									T	.	T
Template Predicted Secondary structure																																																						.	.	.	.																							.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.					.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	I	S	A	Q	L	Q	N	A	H	R	H	R	K	G	L	P	T	W	G	D	E	V	R	L	C	W	E	V	D	S	C	V	V	L	T
Query Conservation
Alig confidence														.	.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		S	I	V	K	V	F	A	P	E	G	E	H	.	.	.	.	.	F	S	F	G	E	K	V	T	I	K	V	K	E	E	L	L	V	L	F	D
Template Known Secondary structure										T	T			.	.	.	.	.			T	T									G	G	G
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330						.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions