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Job DescriptionP31134
Confidence100.00%DateThu Jan 5 11:47:18 GMT 2012
Rank10Aligned Residues355
% Identity36%Templatec2d62A_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:multiple sugar-binding transport atp-binding PDBTitle: crystal structure of multiple sugar binding transport atp-2 binding protein
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   16...20.........30.........40.........50.........60.........70.........80.........90.
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Query Sequence  LTPLLEIRNLTKSYDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPSAGQIMLDGVDLSQVPPYLR. . . .
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Template Sequence  GXAEVKLINIWKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPK
Template Known Secondary structure  S

STT
TT

STTSSTSS

STTGGGT

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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   92.......100.........110.........120.........130.........140.........150.........160.........
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Query Sequence  . . PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPK
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Template Sequence  ERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPRELSGGQRQRVALGRAIIRRPK
Template Known Secondary structure  T


S



TTS
TTT

TT
GGGTT

GGGS
SS

S
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   170.........180.........190.........200.........210.........220.........230.........240.........
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Query Sequence  LLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEF
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Template Sequence  VFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTFVAGF
Template Known Secondary structure  STTTT

T
S

STT
S
SB
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   163......170.........180.........190.........200.........210.........220.........230.........240..
 
   250... ......260.........270.........280.........290.........300..... ....310.........320.....
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Query Sequence  IGSV. . NVFEGVLKERQEDGLVLDSPGLVHPLKVDADASVVDNVPVHVALRPEKIMLC. . EEPPANGCNFAVGEVIHIAY
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Template Sequence  IGSPPXNFLDATITDDGFLDFGEFKLKLLQDQFEVLEEENXVGKEVIFGIRPEDVHDASFTHIDVPEENTVKATVDIIEN
Template Known Secondary structure  SSSS


TTS
SS


TT
TT

GGGGGG
S


TTTS
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   243......250.........260.........270.........280.........290.........300.........310.........320..
 
   326...330.........340.........350.........360.........370......
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Query Sequence  LGDLSVYHVRLKSGQMISAQLQNAHRHRKGLPTWGDEVRLCWEVDSCVVLT
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Template Sequence  LGGEKIVHLRRG. NISFTAKFPKESK. . . . . VREGDEVSVVFDXKKIHIFR
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SST.TTT

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TT

GGG
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   323......330.... .....340....... ..350.........360.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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