Job Description P31134 Confidence 100.00% Date Thu Jan 5 11:47:18 GMT 2012 Rank 4 Aligned Residues 344 % Identity 38% Template c1vciA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp Resolution 2.90 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	L	T	P	L	L	E	I	R	N	L	T	K	S	Y	D	G	Q	H	A	V	D	D	V	S	L	T	I	Y	K	G	E	I	F	A	L	L	G	A	S	G	C	G	K	S	T	L	L	R	M	L	A	G	F	E	Q	P	S	A	G	Q	I	M	L	D	G	V	D	L	S	Q	V	P	P	Y	L	R	P	I
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		I	K	M	V	E	.	V	K	L	E	N	L	T	K	R	F	G	N	F	T	A	V	N	K	L	N	L	T	I	K	D	G	E	F	L	V	L	L	G	P	S	G	C	G	K	T	T	T	L	R	M	I	A	G	L	E	E	P	T	E	G	R	I	Y	F	G	D	R	D	V	T	Y	L	P	P	K	D	R	N	I
Template Known Secondary structure							.											T	T													T	T									T	T	S	S										T	S	S			S							T	T				T	T	S		G	G	G	T	T
Template Predicted Secondary structure							.
Template SS confidence
		8	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	M	M	F	Q	S	Y	A	L	F	P	H	M	T	V	E	Q	N	I	A	F	G	L	K	Q	D	K	L	P	K	A	E	I	A	S	R	V	N	E	M	L	G	L	V	H	M	Q	E	F	A	K	R	K	P	H	Q	L	S	G	G	Q	R	Q	R	V	A	L	A	R	S	L	A	K	R	P	K	L	L	L	L
Query Conservation
Alig confidence								.	.	.	.	.	.											.	.
Template Conservation								.	.	.	.	.	.											.	.
Template Sequence		S	M	V	F	Q	H	.	.	.	.	.	.	M	T	V	Y	E	N	I	A	F	P	.	.	L	K	K	F	P	K	D	E	I	D	K	R	V	R	W	A	A	E	L	L	Q	I	E	E	L	L	N	R	Y	P	A	Q	L	S	G	G	Q	R	Q	R	V	A	V	A	R	A	I	V	V	E	P	D	V	L	L	M
Template Known Secondary structure								.	.	.	.	.	.									T	T	.	.																				T	T		G	G	G	T	T			G	G	G			S	S												T	T			S
Template Predicted Secondary structure								.	.	.	.	.	.											.	.
Template SS confidence
		87	.	.	90	.	.							.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	P	M	G	A	L	D	K	K	L	R	D	R	M	Q	L	E	V	V	D	I	L	E	R	V	G	V	T	C	V	M	V	T	H	D	Q	E	E	A	M	T	M	A	G	R	I	A	I	M	N	R	G	K	F	V	Q	I	G	E	P	E	E	I	Y	E	H	P	T	T	R	Y	S	A	E	F	I	G	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	P	L	S	N	L	D	A	K	L	R	V	A	M	R	A	E	I	K	K	L	Q	Q	K	L	K	V	T	T	I	Y	V	T	H	D	Q	V	E	A	M	T	M	G	D	R	I	A	V	M	N	R	G	Q	L	L	Q	I	G	S	P	T	E	V	Y	L	R	P	N	S	V	F	V	A	T	F	I	G	A	P
Template Known Secondary structure			S	T	T	T	T	S																												S										S							T	T														S		S	B							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	F	E	G	V	L	K	E	R	Q	E	D	G	L	V	L	D	S	P	G	L	V	H	P	L	K	V	D	A	D	A	S	V	V	D	N	V	P	V	H	V	A	L	R	P	E	K	I	M	L	C	E	E	P	P	A	N	G	C	N	F	A	V	G	E	V	I	H	I	A	Y	L	G	D	L	S	V	Y	H
Query Conservation
Alig confidence														.	.	.																																							.
Template Conservation														.	.	.																																							.
Template Sequence		E	M	N	I	L	E	V	S	V	G	D	G	.	.	.	Y	L	E	G	R	G	F	R	I	E	L	P	Q	M	D	L	L	K	D	Y	V	G	K	T	V	L	F	G	I	R	P	E	H	M	T	V	E	G	.	V	H	M	K	R	T	A	R	L	I	G	K	V	D	F	V	E	A	L	G	T	D	T	I	L	H
Template Known Secondary structure												S	S	.	.	.					T	T										T	T	G	G	G	B	T	S								G	G	G				S		.				S	S															S	S
Template Predicted Secondary structure														.	.	.																																							.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	L	K	S	G	Q	M	I	S	A	Q	L	Q	N	A	H	R	H	R	K	G	L	P	T	W	G	D	E	V	R	L	C	W	E	V	D	S	C	V	V	L	T
Query Conservation
Alig confidence						.														.	.	.	.	.
Template Conservation						.														.	.	.	.	.
Template Sequence		V	K	F	G	.	D	E	L	V	K	V	K	L	P	G	H	I	P	.	.	.	.	.	I	E	P	G	R	E	V	K	V	I	M	D	L	D	M	I	H	V	F	D
Template Known Secondary structure					T	.	T									S				.	.	.	.	.			T	T									G	G	G
Template Predicted Secondary structure						.														.	.	.	.	.
Template SS confidence
		329	330	.	.		.	.	.	.	.	.	.	340	.	.	.	.	.						.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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