Job Description P31061 Confidence 73.86% Date Thu Jan 5 11:46:57 GMT 2012 Rank 127 Aligned Residues 89 % Identity 15% Template c3mkyP_ PDB info PDB header:dna binding protein/dna Chain: P: PDB Molecule:protein sopb; PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form Resolution 2.86 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	K	K	Q	L	A	D	I	F	G	A	S	I	R	T	I	Q	N	W	Q	E	Q	G	M	P	V	L	R	G	G	G	K	G	N	E	V	L	Y	D	S	A	A	V	I	R	W	Y	A	E	R	D	A	E	I	E	N	E	K	L	R	R	E	V	E	E	L	R	Q	A	S	E	T	D	L	Q	P	G	T	I
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																								.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																								.	.	.	.	.
Template Sequence		G	N	I	S	A	L	A	D	A	E	N	I	S	R	K	I	I	T	R	C	I	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	L	P	K	S	V	V	A	L	F	S	H	.	P	G	E	L	S	A	R	S	G	D	A	L	Q	K	A	F	T	D	K	E	E	L	L	.	.	.	.	.
Template Known Secondary structure		T										T	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	S							T	S	S	S	.	G	G	G	S												T	T	T						.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																								.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.																200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	E	R	H	R	L	T	R	A	Q	A	D	A	Q	E	L	K	N	A	R	D	S	A	E	V	V	E	T	A	F	C	T	F	V	L	S	R	I	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	K	Q	Q	A	S	N	L	H	E	Q	K	K	A	G	V	I	F	E	A	D	E	V	I	T	L	L	T	S	V	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.													T	T															T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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