Job Description P31061 Confidence 31.83% Date Thu Jan 5 11:46:57 GMT 2012 Rank 350 Aligned Residues 50 % Identity 18% Template c1ic8B_ PDB info PDB header:transcription/dna Chain: B: PDB Molecule:hepatocyte nuclear factor 1-alpha; PDBTitle: hepatocyte nuclear factor 1a bound to dna : mody3 gene2 product Resolution 2.60 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	K	K	Q	L	A	D	I	F	G	A	S	I	R	T	I	Q	N	W	Q	E	Q	G	M	P	V	L	R	G	G	G	K	G	N	E	V	L	Y	D	S	A	A	V	I	R	W	Y	A	E	R	D	A	E	I	E	N	E	K
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.
Template Sequence		I	P	Q	R	E	V	V	D	T	T	G	L	N	Q	S	H	L	S	Q	H	L	N	K	G	T	P	M	K	T	Q	K	R	A	.	.	.	.	.	.	.	.	.	A	L	Y	T	W	Y	V	R	K	Q	R	E	V	A	Q	Q	F
Template Known Secondary structure																								S											.	.	.	.	.	.	.	.	.										T	T	T	T	T	T	T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160										.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions