 |
Job Description | P32680 | Confidence | 6.59% | Date | Thu Jan 5 11:50:06 GMT 2012 |
Rank | 29 | Aligned Residues | 46 |
% Identity | 13% | Template | d1or7a1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma4 domain
|
Resolution | 2.00 |
|
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | P | I | H | L | R | L | E | R | L | E | S | W | Q | H | V | T | F | M | A | C | L | C | E | R | M | Y | P | N | Y | A | M | F | C | Q | Q | T | G | F | G | D | G | Q | I | Y | R | R | I |
Query Conservation |   |
  |   |   |   |   |
|
|   |   |
|   |   |
|
|
|   |
|
|   |
|
|
|   |
|
|
|   |
|
|
|   |
|
|   |
|   |   |   |
|
|
|   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|
|   |   |
|   |   |   |   |
|   |
|   |   |
|   |   |   |   |
|   |
| . | . |   |   |
|
|
|   |   |
|
|   |
|   |   |
|
|   |   |   |
|
Template Sequence |   |
Q | I | V | F | R | T | I | E | S | L | P | E | D | L | R | M | A | I | T | L | R | E | L | D | G | L | S | . |
. |
Y | E | E | I | A | A | I | M | D | C | P | V | G | T | V | R | S | R | I |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
| . | . |  |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
129 | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | |
|
. | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|