Job Description P76387 Confidence 99.89% Date Thu Jan 5 12:22:28 GMT 2012 Rank 6 Aligned Residues 236 % Identity 14% Template c3ez6B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:plasmid partition protein a; PDBTitle: structure of para-adp complex:tetragonal form Resolution 2.58 Å

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		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.				.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		Y	A	S	I	P	L	S	E	W	Q	K	A	R	D	S	V	K	T	I	K	G	I	K	R	Y	K	Q	S	Q	L	L	A	V	G	N	P	T	D	L	A	I	E	A	I	R	S	L	R	T	S	L	H	F	A	M	.	.	.	M	Q	A	Q	N	N	V	L	M	M	T	G	V	S	P	S	I	G	K	T	F	V
Query Conservation																																																									.	.	.
Alig confidence																																																									.	.	.
Template Conservation
Template Sequence		L	A	K	L	P	L	L	T	R	A	N	V	D	Y	A	V	S	E	M	E	E	K	G	Y	V	F	D	K	R	P	A	G	S	S	M	K	Y	A	M	S	I	Q	N	I	I	D	I	Y	E	H	R	G	V	P	K	Y	R	D	R	Y	S	E	A	Y	V	I	F	I	S	N	L	K	G	G	V	S	K	T	V	S
Template Known Secondary structure		G	G	G	S	T	T																T	T						B	S		S	S	S		B															T	T									S	S									S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		544	.	.	.	.	.	550	.	.							.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.										.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Query Sequence		C	A	N	L	A	A	V	I	S	.	.	.	.	.	.	Q	T	N	K	R	V	L	L	I	D	C	D	M	R	K	G	Y	T	H	E	L	L	G	T	N	N	V	N	G	.	.	.	.	.	.	.	.	.	L	S	E	I	L	I	G	Q	G	D	I	T	T	A	A	K	P	T	S	I	A	K	F	D	L	I	P
Query Conservation											.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.														.																.	.	.	.	.	.	.	.	.
Template Conservation																														.
Template Sequence		T	V	S	L	A	H	A	M	R	A	H	P	H	L	L	M	E	D	L	R	I	L	V	I	D	L	D	P	.	Q	S	S	A	T	M	F	L	S	H	K	H	S	I	G	I	V	N	A	T	S	A	Q	A	M	L	Q	N	V	S	R	E	E	L	L	E	E	F	I	V	P	S	V	V	P	G	V	D	V	M	P
Template Known Secondary structure													T	T	T	G	G	G											T	.	T								S		T	T	T	T		S		S	S																			T					S	S	T	T
Template Predicted Secondary structure																														.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		609	610														.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	P	P	N	P	S	E	L	L	M	S	E	R	F	A	E	L	V	N	W	A	S	K	N	Y	D	L	V	L	I	D	T	P	P	I	L	A	V	T	D	A	A	I	V	G	R	H	V	G	T	T	L	M	V	A	R	Y	A	V	N	T	L	K	E
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.																																									.
Template Conservation																																																									.
Template Sequence		A	S	I	D	D	A	F	I	A	S	D	W	R	E	L	C	N	E	H	L	P	G	Q	N	I	H	A	V	L	K	E	N	V	I	D	K	L	K	S	D	Y	D	F	I	L	V	D	S	G	P	H	L	D	A	F	.	L	K	N	A	L	A	S	A	N	I	L	F	T	P	L	P	P	A	T	V	D	F	H	S
Template Known Secondary structure				T	T							T									S	T	T	S		T	T	S						T					T	T	T		S								S			S			.									S								S	S
Template Predicted Secondary structure																																																									.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		676	.	.	.	680	.	.	.	.	.										.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.
Query Sequence		V	E	T	S	L	S	R	F	E	Q	.	.	.	.	.	.	.	.	.	N	G	I	P	V	K	G	V	I	L	N	S	I	F	R	R	A	S	A
Query Conservation												.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	K	Y	V	A	R	L	P	E	L	V	K	L	I	S	D	E	G	C	E	C	Q	L	A	T	N	I	G	F	M	S	K	L	S	N	K	A
Template Known Secondary structure							T	T											T	S																	S
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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