Job Description P76387 Confidence 99.08% Date Thu Jan 5 12:22:28 GMT 2012 Rank 52 Aligned Residues 147 % Identity 21% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	A	Q	N	N	V	L	M	M	T	G	V	S	P	S	I	G	K	T	F	V	C	A	N	L	A	A	V	I	S	Q	T	N	K	R	V	L	L	I	D	C	D	M	R	K	G	Y	T	H	E	L	L	G	T	N	N	V	N	G	L	S	E	I	L	I	G	Q	G	D	I	T	T	A	A	K	P	T	S	I
Query Conservation
Alig confidence													.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	A	E	K	P	Y	V	I	M	F	V	.	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F	S	V	V	I	A	A	S	D	T	F	R	A	G	A	I	E	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	H	A	K	R
Template Known Secondary structure		T	S		S								.			T	T	S	S															T	T										T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170																						.	.	.	.	.	.
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.		.	.	.	.	.	.	640	.	.	.	.						.	.	.	.	.	650	.	.	.	.	.	.	.	.	.			660	.	.	.	.	.	.	.	.	.	670	.	.	.
Predicted Secondary structure																																		.												.	.	.	.	.																.	.
Query SS confidence																																		.												.	.	.	.	.																.	.
Query Sequence		A	K	F	D	L	I	P	R	G	Q	V	P	P	N	P	S	E	L	L	M	S	E	R	F	A	E	L	V	N	W	A	S	.	K	N	Y	D	L	V	L	I	D	T	P	.	.	.	.	.	P	I	L	A	V	T	D	A	A	I	V	G	R	H	V	.	.	G	T	T	L	M	V	A	R	Y	A	V	N	T	L
Query Conservation																																		.												.	.	.	.	.																.	.
Alig confidence																	.	.	.	.	.	.												.												.	.	.	.	.																.	.										.
Template Conservation																	.	.	.	.	.	.																																																							.
Template Sequence		I	G	V	K	V	I	K	H	S	Y	G	A	D	P	A	.	.	.	.	.	.	A	V	A	Y	D	A	I	Q	H	A	K	A	R	G	I	D	V	V	L	I	D	T	A	G	R	S	E	T	N	R	N	L	M	D	E	M	K	K	I	A	R	V	T	K	P	N	L	V	I	F	V	G	D	A	.	L	A	G	N
Template Known Secondary structure		T	T							S	T	T					.	.	.	.	.	.														T		S								S	S			S	S	S																S								T	.	T		T	T
Template Predicted Secondary structure																	.	.	.	.	.	.																																																							.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.							.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.
		674	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	V	E	T	S	L	S	R	F	E	Q	N	G	I	P	V	K	G	V	I	L	N	S	I	F
Query Conservation
Alig confidence																.	.
Template Conservation																.	.
Template Sequence		A	I	V	E	Q	A	R	Q	F	N	E	A	V	K	.	.	I	D	G	I	I	L	T	K	L	D
Template Known Secondary structure		T												S		.	.								S	G	G
Template Predicted Secondary structure																.	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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