Job Description P76387 Confidence 99.44% Date Thu Jan 5 12:22:28 GMT 2012 Rank 43 Aligned Residues 164 % Identity 20% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	I	E	A	I	R	S	L	R	T	S	L	H	F	A	M	M	Q	A	Q	N	N	V	L	M	M	T	G	V	S	P	S	I	G	K	T	F	V	C	A	N	L	A	A	V	I	S	Q	T	N	K	R	V	L	L	I	D	C	D	M	R	K	G	Y	T	H	E	L	L	G	T	N	N	V	N	G	L	S	E
Query Conservation
Alig confidence																																	.																																							.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		V	Y	E	E	L	T	K	F	L	G	T	E	A	K	P	I	E	I	K	E	K	P	T	I	L	L	M	V	G	I	Q	.	G	S	G	K	T	T	T	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										T	T	S	S								S	S	S									T	.	T	S	S														T	T	T											S	S	T							.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		585	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.		.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.								.	.	.
Predicted Secondary structure																																																				.																				.	.	.	.	.	.	.
Query SS confidence																																																				.																				.	.	.	.	.	.	.
Query Sequence		I	L	I	G	Q	G	D	I	T	T	A	A	K	P	T	S	I	A	K	F	D	L	I	P	R	G	Q	V	P	P	N	P	S	E	L	L	M	S	E	R	F	A	E	L	V	N	W	A	S	K	.	N	Y	D	L	V	L	I	D	T	P	P	I	L	A	V	T	D	A	A	.	.	.	.	.	.	.	I	V	G
Query Conservation																																																				.																				.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																	.								.	.	.	.	.											.																				.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																	.								.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	.	E	K	D	A	I	K	L	.	.	.	.	.	A	K	E	G	V	D	Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M	K	Q	I	S	N	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.					G	G	G	T							T	T	.								.	.	.	.	.											T	T		S										S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																	.								.	.	.	.	.
Template SS confidence
													148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170						.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	V	G	T	T	L	M	V	A	R	Y	A	V	N	T	L	K	E	V	E	T	S	L	S	R	F	E	Q	N	G	I	P	V	K	G	V	I	L	N	S	I	F
Query Conservation
Alig confidence														.																			.	.
Template Conservation														.																			.	.
Template Sequence		I	H	P	H	E	V	I	L	V	I	D	G	.	T	I	G	Q	Q	A	Y	N	Q	A	L	A	F	K	E	A	T	P	.	.	I	G	S	I	I	V	T	K	L	D
Template Known Secondary structure					S								G	.	G	G	G	G	G											S		T	.	.	T									S
Template Predicted Secondary structure														.																			.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions