Job Description P76387 Confidence 96.32% Date Thu Jan 5 12:22:28 GMT 2012 Rank 97 Aligned Residues 129 % Identity 13% Template c2wwwB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:methylmalonic aciduria type a protein, PDBTitle: crystal structure of methylmalonic acidemia type a protein Resolution 2.64 Å

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		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	E	A	I	R	S	L	R	T	S	L	H	F	A	M	M	Q	A	Q	N	N	V	L	M	M	T	G	V	S	P	S	I	G	K	T	F	V	C	A	N	L	A	A	V	I	S	Q	T	N	K	R	V	L	L	I	D	C	D	M	R	K	G	Y	T	H	E	L	L	G	T	N	N	V	N	G	L	S	E	I
Query Conservation
Alig confidence																													.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	K	V	L	L	Y	H	R	E	Q	E	Q	S	N	K	G	K	P	L	A	F	R	V	G	L	S	.	G	P	P	G	A	G	K	S	T	F	I	E	Y	F	G	K	M	L	T	E	R	G	H	K	L	S	V	L	A	V	D	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure															T	T	T	T			S	S							.			T	T	S	S															T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		586	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	G	Q	G	D	I	T	T	A	A	K	P	T	S	I	A	K	F	D	L	I	P	R	G	Q	V	P	P	N	P	S	E	L	L	M	S	E	R	F	A	E	L	V	N	W	A	S	K	N	Y	D	L	V	L	I	D	T	P	P	I	L	A	V	T	D	A	A	I	V	G	R	H	V	G	T	T	L	M	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																		.										.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																		.										.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	L	S	R	D	M	N	A	Y	I	R	P	T	R	T	T	N	E	.	A	I	L	L	C	E	G	A	G	.	.	.	.	.	.	.	.	.	.	.	Y	D	I	I	L	I	E	T	.	.	.	.	V	G	Q	S	E	F	A	V	A	D	M	V	D	M	F	V	L	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	S	S	S		T	T							T	T				.								T	T	.	.	.	.	.	.	.	.	.	.	.		S							.	.	.	.										T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																		.										.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template SS confidence
														200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.												.	.	.	.	230	.	.	.					.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		666	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	Y	A	V	N	T	L	K	E	V	E	T	S	L	S	R	F	E	Q	N	G	I	P	V	K	G	V	I	L	N	S	I	F
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	I	E	M	A	D	L	V	A	V	T	K	S	D
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S		S								S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		264	.	.																		.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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