Job Description P76387 Confidence 88.03% Date Thu Jan 5 12:22:28 GMT 2012 Rank 281 Aligned Residues 139 % Identity 14% Template c2pssC_ PDB info PDB header:transferase Chain: C: PDB Molecule:spermidine synthase; PDBTitle: the structure of plasmodium falciparum spermidine synthase in its apo-2 form Resolution 2.20 Å

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		510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	S	L	R	T	S	L	H	F	A	M	M	Q	A	Q	N	N	V	L	M	M	T	G	V	S	P	S	I	G	K	T	F	V	C	A	N	L	A	A	V	I	S	Q	T	N	K	R	V	L	L	I	D	C	D	M	R	K	G	Y	T	H	E	L	L	G	T	N	N	V	N	G	L	S	E	I	L	I	G	Q
Query Conservation
Alig confidence																								.	.	.	.	.															.	.																																.	.	.	.	.	.
Template Conservation																								.	.	.	.	.															.	.																																.	.	.	.	.	.
Template Sequence		Y	H	E	M	M	T	H	V	P	M	T	V	S	K	E	P	K	N	V	L	V	V	.	.	.	.	.	G	G	G	D	G	G	I	I	R	E	L	C	K	Y	.	.	K	S	V	E	N	I	D	I	C	E	I	D	E	T	V	I	E	V	S	K	I	Y	F	K	N	I	S	C	G	Y	E	.	.	.	.	.	.
Template Known Secondary structure														S	S	S								.	.	.	.	.			T	T									T		.	.	T	T									S																	G	G	G	G	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.															.	.																																.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.						.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	I	T	T	A	A	K	P	T	S	I	A	K	F	D	L	I	P	R	G	Q	V	P	P	N	P	S	E	L	L	M	S	E	R	F	A	E	L	V	N	W	A	S	K	N	Y	D	L	V	L	I	D	T	P	P	I	L	A	V	T	D	A	A	I	V	G	R	H	V	G	T	T	L	M	V	A	R	Y	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	D	K	R	V	N	V	F	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	A	S	K	F	L	E	N	V	T	N	T	Y	D	V	I	I	V	D	S	S	N	F	Y	.	.	.	.	E	K	I	Y	N	A	L	K	P	N	G	Y	C	V	A	Q	C	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	S	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							T	T			S														.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template SS confidence
													169	170	.	.	.	.	.	.															.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		670			.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		V	.	.	N	T	L	K	E	V	E	T	S	L	S	R	F	E	Q	N	G	I	P	V
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		S	L	W	I	H	V	G	T	I	K	N	M	I	G	Y	A	K	K	L	F	K	K	V
Template Known Secondary structure			T	T	T														T	T		S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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