Job Description P76387 Confidence 77.62% Date Thu Jan 5 12:22:28 GMT 2012 Rank 448 Aligned Residues 310 % Identity 9% Template c2oevA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: crystal structure of alix/aip1 Resolution 3.30 Å

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		84	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		P	P	A	S	D	A	E	I	Q	L	I	.	R	S	R	L	V	L	G	K	T	V	D	D	L	D	L	D	I	A	V	S	K	N	T	F	P	I	F	G	A	G	W	D	R	L	M	G	R	Q	N	E	T	V	K	V	T	T	F	N	R	P	K	E	M	A	D	Q	V	F	T	L	N	V	L	D	N	K	N	Y
Query Conservation													.
Alig confidence													.
Template Conservation
Template Sequence		A	D	L	V	N	R	S	I	A	Q	M	R	E	A	T	T	L	A	N	G	V	L	A	S	L	N	L	P	A	A	I	E	D	V	S	G	D	T	V	P	Q	S	I	L	T	K	S	R	S	V	I	E	Q	G	G	I	Q	T	V	D	Q	L	I	K	E	L	P	E	L	L	Q	R	N	R	E	I	L	D	E	S
Template Known Secondary structure																										T	T	T	T	T	T	T	S		S	S	T	T	S														T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	S	S	D	G	G	F	S	A	R	G	Q	A	G	Q	M	L	K	K	E	G	V	T	L	M	V	E	A	I	H	A	S	P	G	S	E	F	T	V	T	K	Y	S	T	L	G	M	I	N	Q	L	Q	N	S	L	T	V	T	E	N	G	K	D	A	G	V	L	S	L	T	Y	T	G	E	D	R	E	Q	I
Query Conservation
Alig confidence																													.	.	.	.
Template Conservation																													.	.	.	.
Template Sequence		L	R	L	L	D	E	E	E	A	T	D	N	D	L	R	A	K	F	K	E	R	W	Q	R	T	P	S	.	.	.	.	N	E	L	Y	K	P	L	R	A	E	G	T	N	F	R	T	V	L	D	K	A	V	Q	A	D	G	Q	V	K	E	C	Y	Q	S	H	R	D	T	I	V	L	L	C	K	P	E	P	E	L
Template Known Secondary structure																	T	T	S	S	S	S			S				.	.	.	.				S	S																													T	T								T	S
Template Predicted Secondary structure																													.	.	.	.
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.					.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	I	L	N	S	I	A	R	N	Y	Q	E	Q	N	I	E	R	K	S	A	E	A	S	K	S	L	A	F	L	A	Q	Q	L	P	E	V	R	S	R	L	D	V	A	E	N	K	L	N	A	F	R	Q	D	K	D	S	V	D	L	P	L	E	A	K	A	V	L	D	S	M	V	N	I	D	A	Q	L	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	A	I	P	S	A	N	P	A	K	T	M	Q	G	S	E	V	V	N	V	L	K	S	L	L	S	N	L	D	E	V	K	K	E	R	E	G	L	E	N	D	L	K	S	V	N	F	D	M	T	S	K	F	L	T	A	L	A	Q	D	G	V	I	N	E	E	A	L	S	V	T	E	L	D	R	V	Y	G	G
Template Known Secondary structure					S							S	S		S	S																																														S	S	S															T
Template Predicted Secondary structure
Template SS confidence
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.				.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		L	T	F	K	E	A	E	I	S	K	L	Y	T	K	V	H	P	A	Y	R	T	L	L	E	K	R	Q	A	L	E	.	.	.	D	E	K	A	K	L	N	G	R	V	T	A	M	P	K	T	Q	Q	E	I	V	R	L	T	R	D	V	E	S	G	Q	Q	V	Y	M	Q	L	L	N	K	E	Q	E	L	K
Query Conservation																																.	.	.
Alig confidence																																.	.	.
Template Conservation
Template Sequence		L	T	T	K	V	Q	E	S	L	K	K	Q	E	G	L	L	K	N	I	Q	V	S	H	Q	E	F	S	K	M	K	Q	S	N	N	E	A	N	L	R	E	E	V	L	K	N	L	A	T	A	Y	D	N	F	V	E	L	V	A	N	L	K	E	G	T	K	F	Y	N	E	L	T	E	I	L	V	R	F	Q
Template Known Secondary structure																															S			S	S
Template Predicted Secondary structure
Template SS confidence
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions