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Job DescriptionP76387
Confidence99.33%DateThu Jan 5 12:22:28 GMT 2012
Rank49Aligned Residues164
% Identity20%Templatec2j37W_
PDB info PDB header:ribosomeChain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs
Resolution8.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   505....510.........520.........530.........540.........550.........560.........570.........580....
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Query Sequence  LAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSE
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Template Sequence  AVFKELVKLVDPGVKAWTPTKGNVIMFVGLQ. GSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQL. . . . . . . . . .
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   78.80.........90.........100........ .110.........120.........130.........140......
 
   585....590.........600.........610.........620.........630.... .....640.........650... ...
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Query Sequence  ILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPSELLMSERFAELVNWASK. NYDLVLIDTPPILAVTDAA. . . . . . . IVG
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Template Sequence  . . . . . . . . KQNATKARIP. . . . FYGSYTEMDPVII. . . . . ASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANA
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   149150........ .160.........170. ........180.........190.........200.........210.
 
   657..660.........670.........680.........690.........
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Query Sequence  RHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIF
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Template Sequence  IQPDNIVYVMDA. SIGQACEAQAKAFKDKVD. . VASVIVTKLD
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   212.......220... ......230.........240. ........250.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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