Job Description P76387 Confidence 99.13% Date Thu Jan 5 12:22:28 GMT 2012 Rank 51 Aligned Residues 150 % Identity 26% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.		.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		F	A	M	M	Q	A	Q	N	N	V	L	M	M	T	G	V	S	P	S	I	G	K	T	F	V	C	A	N	L	A	A	V	I	S	Q	T	.	N	K	R	V	L	L	I	D	C	D	M	R	K	G	Y	T	H	E	L	L	G	T	N	N	V	N	G	L	S	E	I	L	I	G	Q	G	D	I	T	T	A	A	K
Query Conservation																																						.
Alig confidence																			.																			.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	.	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	L	A	E
Template Known Secondary structure				S		S	S	S	S								S	S	.	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.																			.	150	.	.	.
		598	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.		.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.								.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.																				.	.	.	.	.	.	.
Query SS confidence																																						.																				.	.	.	.	.	.	.
Query Sequence		P	T	S	I	A	K	F	D	L	I	P	R	G	Q	V	P	P	N	P	S	E	L	L	M	S	E	R	F	A	E	L	V	N	W	A	S	.	K	N	Y	D	L	V	L	I	D	T	P	P	I	L	A	V	T	D	A	.	.	.	.	.	.	.	A	I	V	G	R	H	V	G	T	T	L	M	V	A	R	Y	A
Query Conservation																																						.																				.	.	.	.	.	.	.
Alig confidence							.												.	.	.	.	.	.	.	.												.																				.	.	.	.	.	.	.																	.
Template Conservation							.												.	.	.	.	.	.	.	.																																																							.
Template Sequence		Q	V	G	V	D	.	F	F	P	S	D	V	G	Q	K	P	V	.	.	.	.	.	.	.	.	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	.
Template Known Secondary structure			T	T			.					S	S				T	T	.	.	.	.	.	.	.	.													T	T		S											S	S																		S								T	.
Template Predicted Secondary structure							.												.	.	.	.	.	.	.	.																																																							.
Template SS confidence
		154	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.									170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	T	L	K	E	V	E	T	S	L	S	R	F	E	Q	N	G	I	P	V	K	G	V	I	L	N	S	I	F
Query Conservation
Alig confidence																.	.
Template Conservation																.	.
Template Sequence		M	T	G	Q	D	A	A	N	T	A	K	A	F	N	.	.	E	A	L	P	L	T	G	V	V	L	T	K	V	D
Template Known Secondary structure		T	T	G	G	G	G									.	.	T	T		S	S								S	S
Template Predicted Secondary structure																.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions