Job Description P76387 Confidence 99.41% Date Thu Jan 5 12:22:28 GMT 2012 Rank 46 Aligned Residues 164 % Identity 21% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	I	E	A	I	R	S	L	R	T	S	L	H	F	A	M	M	Q	A	Q	N	N	V	L	M	M	T	G	V	S	P	S	I	G	K	T	F	V	C	A	N	L	A	A	V	I	S	Q	T	N	K	R	V	L	L	I	D	C	D	M	R	K	G	Y	T	H	E	L	L	G	T	N	N	V	N	G	L	S	E
Query Conservation
Alig confidence																															.																																									.	.	.	.	.	.	.	.	.	.
Template Conservation																															.																																									.	.	.	.	.	.	.	.	.	.
Template Sequence		T	V	Y	E	A	L	K	E	A	L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	.	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T	T	S	S								S	S								.		T	T	S	S															T	T										S	S									.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.																																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		585	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.		.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.								.
Predicted Secondary structure																																																				.																						.	.	.	.	.	.	.
Query SS confidence																																																				.																						.	.	.	.	.	.	.
Query Sequence		I	L	I	G	Q	G	D	I	T	T	A	A	K	P	T	S	I	A	K	F	D	L	I	P	R	G	Q	V	P	P	N	P	S	E	L	L	M	S	E	R	F	A	E	L	V	N	W	A	S	K	.	N	Y	D	L	V	L	I	D	T	P	P	I	L	A	V	T	D	A	A	I	V	.	.	.	.	.	.	.	G
Query Conservation																																																				.																						.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.											.												.	.	.	.	.	.	.	.													.																						.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.											.												.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	R	L	L	G	E	K	V	G	V	P	.	V	L	E	V	M	D	G	E	S	P	E	.	.	.	.	.	.	.	.	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V
Template Known Secondary structure		.	.	.	.	.	.	.	.								T			.						T	T					.	.	.	.	.	.	.	.														T		S										S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.											.												.	.	.	.	.	.	.	.
Template SS confidence
										146	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.									.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	V	G	T	T	L	M	V	A	R	Y	A	V	N	T	L	K	E	V	E	T	S	L	S	R	F	E	Q	N	G	I	P	V	K	G	V	I	L	N	S	I	F
Query Conservation
Alig confidence																		.															.	.
Template Conservation																		.															.	.
Template Sequence		L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	.	E	A	L	S	V	A	R	A	F	D	E	K	V	G	.	.	V	T	G	L	V	L	T	K	L	D
Template Known Secondary structure					S								S	S	S		S	.													S		.	.									S	S
Template Predicted Secondary structure																		.															.	.
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions