Job Description P76387 Confidence 99.44% Date Thu Jan 5 12:22:28 GMT 2012 Rank 44 Aligned Residues 150 % Identity 19% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	M	M	Q	A	Q	N	N	V	L	M	M	T	G	V	S	P	S	I	G	K	T	F	V	C	A	N	L	A	A	V	I	S	Q	T	N	K	R	V	L	L	I	D	C	D	M	R	K	G	Y	T	H	E	L	L	G	T	N	N	V	N	G	L	S	E	I	L	I	G	Q	G	D	I	T	T	A	A	K	P
Query Conservation
Alig confidence																			.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	.	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Q	L	G	N	Q
Template Known Secondary structure				S		S	S	S	S								S	S	.	S	S	S	S	T	T	T										T	T	S					B						S	S	S		S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.																			.	.	.	.	.	.
		599	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.		.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.										.	.	.	.	660	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.																							.	.	.	.	.	.	.	.	.
Query SS confidence																																					.																							.	.	.	.	.	.	.	.	.
Query Sequence		T	S	I	A	K	F	D	L	I	P	R	G	Q	V	P	P	N	P	S	E	L	L	M	S	E	R	F	A	E	L	V	N	W	A	S	.	K	N	Y	D	L	V	L	I	D	T	P	P	I	L	A	V	T	D	A	A	I	V	.	.	.	.	.	.	.	.	.	G	R	H	V	G	T	T	L	M	V	A	R	Y
Query Conservation																																					.																							.	.	.	.	.	.	.	.	.
Alig confidence						.												.	.	.	.	.	.	.	.												.																							.	.	.	.	.	.	.	.	.
Template Conservation						.												.	.	.	.	.	.	.	.
Template Sequence		I	G	V	Q	.	V	Y	G	E	P	N	N	Q	N	P	I	.	.	.	.	.	.	.	.	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A
Template Known Secondary structure		T	T			.					S	S				T	T	.	.	.	.	.	.	.	.													T	T		S									S			S	S	T																		S								T
Template Predicted Secondary structure						.												.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.		.	.	.	.	.	.	160	.	.	.	.									.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		669	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	N	T	L	K	E	V	E	T	S	L	S	R	F	E	Q	N	G	I	P	V	K	G	V	I	L	N	S	I	F
Query Conservation
Alig confidence		.															.	.
Template Conservation		.															.	.
Template Sequence		.	S	I	G	Q	K	A	Y	D	L	A	S	R	F	H	.	.	Q	A	S	P	I	G	S	V	I	I	T	K	M	D
Template Known Secondary structure		.	T	T	G	G	G	G									.	.	T	T		S	S								S	S
Template Predicted Secondary structure		.															.	.
Template SS confidence
			221	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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