 |
Job Description | P76387 | Confidence | 83.20% | Date | Thu Jan 5 12:22:28 GMT 2012 |
Rank | 373 | Aligned Residues | 56 |
% Identity | 20% | Template | c1c4oA_ |
PDB info |
PDB header:replication | Chain: A: PDB Molecule:dna nucleotide excision repair enzyme uvrb; |
PDBTitle: crystal structure of the dna nucleotide excision repair enzyme uvrb2 from thermus thermophilus
|
Resolution | 1.50 Å |
|
 |
  |   |
497 | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | A | V | G | N | P | T | D | L | A | I | E | A | I | R | S | L | R | T | S | L | H | F | A | M | M | Q | A | Q | N | N | V | L | M | M | T | G | V | S | P | S | I | G | K | T | F | V | C | A | N | L | A | A | V | I | S | Q | T | N | K | R | V | L | L | I |
Query Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |   |   |
|
|
|
|   |   |
|   |   |
|
|   |   |   |
|   |   |
|   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |
|   |   |   |   |   | . | . | . | . | . |   |   |   |   |   |   |
|
|   |   |   |
| . |
|
|
|
|
|   |   |   |   |   |   |
|   |   |   | . | . | . |   |   |   |   |
|
|
|
Template Sequence |   |
Y | R | G | P | S | P | K | G | D | Q | P | K | A | I | A | G | L | V | E | A | L | R | . |
. |
. |
. |
. |
D | G | E | R | F | V | T | L | L | G | A | T | . |
G | T | G | K | T | V | T | M | A | K | V | I | E | A | L | . |
. |
. |
G | R | P | A | L | V | L |
Template Known Secondary structure |   |
|
| S |
|
|
|
| T | T |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | T | T |
| S |  |  |  |  |  |  |
| T | . | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | T |
|
|  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |
|
|
|
|
|  |  |  |  |
|
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 30 | . | . | . | . | . | . | . | . | |
. | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | |
|
|
. | . | . | . | . | . | 60 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|